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Gb_11513


Description : no hits & (original description: none)


Gene families : OG0003285 (Archaeplastida) Phylogenetic Tree(s): OG0003285_tree ,
OG_05_0003755 (LandPlants) Phylogenetic Tree(s): OG_05_0003755_tree ,
OG_06_0004534 (SeedPlants) Phylogenetic Tree(s): OG_06_0004534_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_11513
Cluster HCCA: Cluster_341

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00270600 evm_27.TU.AmTr_v1... 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.02 Archaeplastida
AT5G09880 No alias Splicing factor, CC1-like 0.03 Archaeplastida
LOC_Os03g05830.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os10g30370.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e012773_P005 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e038994_P002 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
CC GO:0071203 WASH complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 562 614
IPR000504 RRM_dom 348 417
IPR000504 RRM_dom 253 311
IPR029123 RBM39_linker 438 555
No external refs found!