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  5. Gb_12002

Gb_12002


Description : Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana (sp|q9m302|pp270_arath : 488.0)


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_12002
Cluster HCCA: Cluster_319

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00258750 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g46100... 0.02 Archaeplastida
AMTR_s00010p00259780 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00022p00130870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g14580,... 0.02 Archaeplastida
AMTR_s00024p00204830 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.03 Archaeplastida
AMTR_s00025p00221220 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g07740,... 0.03 Archaeplastida
AMTR_s00029p00104100 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g61870,... 0.03 Archaeplastida
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.06 Archaeplastida
AMTR_s00037p00138240 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g20090... 0.03 Archaeplastida
AMTR_s00066p00107660 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.05 Archaeplastida
AMTR_s00143p00105190 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT1G07740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.18 Archaeplastida
AT1G80150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G09060 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G14580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT4G01400 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.03 Archaeplastida
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Archaeplastida
GSVIVT01002056001 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.04 Archaeplastida
GSVIVT01005273001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.03 Archaeplastida
GSVIVT01008016001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 Archaeplastida
GSVIVT01024665001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
GSVIVT01031218001 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.03 Archaeplastida
Gb_00757 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 Archaeplastida
Gb_05553 No alias group-II intron mitochondrial splicing factor (MISF74) 0.05 Archaeplastida
Gb_06545 No alias Pentatricopeptide repeat-containing protein At2g06000... 0.05 Archaeplastida
Gb_07822 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 Archaeplastida
Gb_14900 No alias Pentatricopeptide repeat-containing protein At4g20090... 0.05 Archaeplastida
Gb_23263 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.06 Archaeplastida
Gb_35219 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.05 Archaeplastida
Gb_37573 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.04 Archaeplastida
LOC_Os01g57630.2 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.03 Archaeplastida
LOC_Os02g26890.1 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.02 Archaeplastida
LOC_Os05g04160.1 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.1 Archaeplastida
LOC_Os05g11700.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os08g39050.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.08 Archaeplastida
MA_10316984g0010 No alias group-II intron mitochondrial splicing factor (MISF74) 0.07 Archaeplastida
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.04 Archaeplastida
MA_131324g0010 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.04 Archaeplastida
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.03 Archaeplastida
MA_17644g0010 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.04 Archaeplastida
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.1 Archaeplastida
MA_57592g0010 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.05 Archaeplastida
MA_60265g0010 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.1 Archaeplastida
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.07 Archaeplastida
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.07 Archaeplastida
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.13 Archaeplastida
Smo74408 No alias Pentatricopeptide repeat-containing protein At1g12775,... 0.03 Archaeplastida
Smo78295 No alias No description available 0.03 Archaeplastida
Solyc02g077650.2.1 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.16 Archaeplastida
Solyc02g079830.1.1 No alias Pentatricopeptide repeat-containing protein At3g13160,... 0.02 Archaeplastida
Solyc04g076070.1.1 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.03 Archaeplastida
Solyc09g014210.3.1 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.06 Archaeplastida
Solyc09g061760.1.1 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.09 Archaeplastida
Solyc11g068470.3.1 No alias group-II intron mitochondrial splicing factor (MISF74) 0.1 Archaeplastida
Solyc11g073230.1.1 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.04 Archaeplastida
Solyc12g014330.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Solyc12g035170.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e003447_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e011589_P001 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e027557_P001 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.06 Archaeplastida
Zm00001e028732_P001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.03 Archaeplastida
Zm00001e030818_P001 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.05 Archaeplastida
Zm00001e034625_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 198 226
IPR002885 Pentatricopeptide_repeat 72 99
IPR002885 Pentatricopeptide_repeat 306 355
IPR002885 Pentatricopeptide_repeat 236 285
IPR002885 Pentatricopeptide_repeat 103 150
IPR002885 Pentatricopeptide_repeat 446 495
IPR002885 Pentatricopeptide_repeat 516 565
IPR002885 Pentatricopeptide_repeat 376 425
No external refs found!