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  5. Gb_12096

Gb_12096


Description : histone (H2B)


Gene families : OG0000186 (Archaeplastida) Phylogenetic Tree(s): OG0000186_tree ,
OG_05_0000249 (LandPlants) Phylogenetic Tree(s): OG_05_0000249_tree ,
OG_06_0000187 (SeedPlants) Phylogenetic Tree(s): OG_06_0000187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_12096
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00085300 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
AMTR_s00012p00085960 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
AMTR_s00012p00088340 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
AT1G07790 HTB1 Histone superfamily protein 0.1 Archaeplastida
AT2G37470 No alias Histone superfamily protein 0.02 Archaeplastida
AT3G45980 HTB9, H2B Histone superfamily protein 0.12 Archaeplastida
AT3G46030 HTB11 Histone superfamily protein 0.1 Archaeplastida
AT5G22880 HTB2, H2B histone B2 0.11 Archaeplastida
AT5G59910 HTB4 Histone superfamily protein 0.11 Archaeplastida
Cpa|evm.model.tig00000944.18 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre06.g264800 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g264900 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre06.g266750 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre06.g271376 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g273850 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre06.g274250 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre06.g275800 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre06.g276550 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Cre06.g276900 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre12.g504550 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre12.g504700 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre12.g505600 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre12.g506200 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Cre13.g570050 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Cre17.g709150 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Cre17.g710450 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Cre17.g711750 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre17.g713450 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre17.g714050 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
GSVIVT01016164001 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
GSVIVT01025021001 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
GSVIVT01025025001 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Gb_26315 No alias histone (H2B) 0.04 Archaeplastida
LOC_Os01g05630.1 No alias histone (H2B) 0.02 Archaeplastida
LOC_Os01g05900.1 No alias histone (H2B) 0.04 Archaeplastida
LOC_Os01g05970.1 No alias histone (H2B) 0.02 Archaeplastida
LOC_Os01g06010.1 No alias histone (H2B) 0.05 Archaeplastida
LOC_Os03g17084.1 No alias histone (H2B) 0.04 Archaeplastida
LOC_Os05g49860.1 No alias histone (H2B) 0.04 Archaeplastida
LOC_Os08g38300.1 No alias histone (H2B) 0.06 Archaeplastida
MA_10428006g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_10435143g0010 No alias histone (H2B) 0.04 Archaeplastida
MA_10435143g0020 No alias histone (H2B) 0.02 Archaeplastida
MA_10436516g0010 No alias histone (H2B) 0.03 Archaeplastida
MA_10436516g0020 No alias histone (H2B) 0.03 Archaeplastida
MA_38565g0010 No alias histone (H2B) 0.04 Archaeplastida
MA_6078786g0010 No alias histone (H2B) 0.1 Archaeplastida
MA_77198g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_8065g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_9293473g0010 No alias histone (H2B) 0.04 Archaeplastida
Mp4g13450.1 No alias histone (H2B) 0.04 Archaeplastida
Mp6g04070.1 No alias histone (H2B) 0.05 Archaeplastida
Mp6g07010.1 No alias histone (H2B) 0.02 Archaeplastida
Pp3c12_7610V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Pp3c13_23540V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Pp3c17_15780V3.1 No alias Histone superfamily protein 0.02 Archaeplastida
Smo182308 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Solyc02g038690.1.1 No alias histone (H2B) 0.05 Archaeplastida
Solyc05g055440.1.1 No alias histone (H2B) 0.04 Archaeplastida
Solyc06g074790.2.1 No alias histone (H2B) 0.05 Archaeplastida
Solyc06g075800.1.1 No alias histone (H2B) 0.11 Archaeplastida
Solyc11g007920.1.1 No alias histone (H2B) 0.07 Archaeplastida
Solyc11g007930.1.1 No alias histone (H2B) 0.03 Archaeplastida
Solyc11g066430.2.1 No alias histone (H2B) 0.05 Archaeplastida
Zm00001e004028_P001 No alias histone (H2B) 0.1 Archaeplastida
Zm00001e009857_P001 No alias histone (H2B) 0.04 Archaeplastida
Zm00001e010906_P002 No alias histone (H2B) 0.04 Archaeplastida
Zm00001e016882_P001 No alias histone (H2B) 0.04 Archaeplastida
Zm00001e019346_P001 No alias histone (H2B) 0.07 Archaeplastida
Zm00001e020484_P002 No alias histone (H2B) 0.08 Archaeplastida
Zm00001e022201_P001 No alias histone (H2B) 0.06 Archaeplastida
Zm00001e023342_P001 No alias histone (H2B) 0.04 Archaeplastida
Zm00001e027803_P001 No alias histone (H2B) 0.03 Archaeplastida
Zm00001e028779_P003 No alias histone (H2B) 0.07 Archaeplastida
Zm00001e034226_P001 No alias histone (H2B) 0.07 Archaeplastida
Zm00001e038466_P001 No alias histone (H2B) 0.04 Archaeplastida
Zm00001e039057_P002 No alias histone (H2B) 0.07 Archaeplastida
Zm00001e041296_P001 No alias histone (H2B) 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003896 DNA primase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009262 deoxyribonucleotide metabolic process IEP Neighborhood
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0031262 Ndc80 complex IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 5 117
No external refs found!