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  5. Gb_12223

Gb_12223


Description : STIPL spliceosome disassembly factor


Gene families : OG0003471 (Archaeplastida) Phylogenetic Tree(s): OG0003471_tree ,
OG_05_0003246 (LandPlants) Phylogenetic Tree(s): OG_05_0003246_tree ,
OG_06_0004880 (SeedPlants) Phylogenetic Tree(s): OG_06_0004880_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_12223
Cluster HCCA: Cluster_312

Target Alias Description ECC score Gene Family Method Actions
AT1G17070 No alias GC-rich sequence DNA-binding factor-like protein with... 0.02 Archaeplastida
Cre07.g325713 No alias RNA processing.RNA splicing.spliceosome... 0.02 Archaeplastida
Mp3g09910.1 No alias STIPL spliceosome disassembly factor 0.02 Archaeplastida
Mp3g24100.1 No alias STIPL spliceosome disassembly factor 0.02 Archaeplastida
Pp3c19_6430V3.1 No alias GC-rich sequence DNA-binding factor-like protein with... 0.07 Archaeplastida
Smo109200 No alias RNA processing.RNA splicing.spliceosome... 0.04 Archaeplastida
Solyc10g005990.4.1 No alias STIPL spliceosome disassembly factor 0.03 Archaeplastida
Zm00001e018105_P001 No alias STIPL spliceosome disassembly factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000467 G_patch_dom 236 277
IPR022783 GCFC_dom 452 726
IPR022159 STIP/TFIP11_N 63 156
No external refs found!