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  5. AT2G26790

AT2G26790


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0010121 (Archaeplastida) Phylogenetic Tree(s): OG0010121_tree ,
OG_05_0010541 (LandPlants) Phylogenetic Tree(s): OG_05_0010541_tree ,
OG_06_0010187 (SeedPlants) Phylogenetic Tree(s): OG_06_0010187_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G26790
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00044p00087550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g26790,... 0.04 Archaeplastida
GSVIVT01015849001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.08 Archaeplastida
Solyc05g012920.3.1 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.07 Archaeplastida
Zm00001e039987_P001 No alias Pentatricopeptide repeat-containing protein At2g26790,... 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000374 Group III intron splicing IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004532 exoribonuclease activity IEP Neighborhood
MF GO:0004534 5'-3' exoribonuclease activity IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006268 DNA unwinding involved in DNA replication IEP Neighborhood
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP Neighborhood
BP GO:0006904 vesicle docking involved in exocytosis IEP Neighborhood
MF GO:0008409 5'-3' exonuclease activity IEP Neighborhood
BP GO:0009648 photoperiodism IEP Neighborhood
BP GO:0009956 radial pattern formation IEP Neighborhood
BP GO:0010018 far-red light signaling pathway IEP Neighborhood
BP GO:0010305 leaf vascular tissue pattern formation IEP Neighborhood
BP GO:0010496 intercellular transport IEP Neighborhood
BP GO:0010586 miRNA metabolic process IEP Neighborhood
BP GO:0010587 miRNA catabolic process IEP Neighborhood
BP GO:0016553 base conversion or substitution editing IEP Neighborhood
BP GO:0016554 cytidine to uridine editing IEP Neighborhood
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0022406 membrane docking IEP Neighborhood
BP GO:0022904 respiratory electron transport chain IEP Neighborhood
BP GO:0032392 DNA geometric change IEP Neighborhood
BP GO:0032508 DNA duplex unwinding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034661 ncRNA catabolic process IEP Neighborhood
BP GO:0042753 positive regulation of circadian rhythm IEP Neighborhood
BP GO:0042773 ATP synthesis coupled electron transport IEP Neighborhood
BP GO:0042775 mitochondrial ATP synthesis coupled electron transport IEP Neighborhood
BP GO:0048278 vesicle docking IEP Neighborhood
BP GO:0048573 photoperiodism, flowering IEP Neighborhood
BP GO:0071490 cellular response to far red light IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
BP GO:0090057 root radial pattern formation IEP Neighborhood
BP GO:0090351 seedling development IEP Neighborhood
BP GO:0140029 exocytic process IEP Neighborhood
BP GO:0140056 organelle localization by membrane tethering IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 387 434
IPR002885 Pentatricopeptide_repeat 624 671
IPR002885 Pentatricopeptide_repeat 708 754
IPR002885 Pentatricopeptide_repeat 456 504
IPR002885 Pentatricopeptide_repeat 211 239
IPR002885 Pentatricopeptide_repeat 289 314
IPR002885 Pentatricopeptide_repeat 356 384
IPR002885 Pentatricopeptide_repeat 562 583
IPR002885 Pentatricopeptide_repeat 151 176
IPR002885 Pentatricopeptide_repeat 597 622
IPR002885 Pentatricopeptide_repeat 248 274
IPR002885 Pentatricopeptide_repeat 323 349
No external refs found!