Gb_26813 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.03 Archaeplastida Gb_26814 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.04 Archaeplastida Gb_40899 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.02 Archaeplastida LOC_Os01g13560.1 No alias CASP-like protein 1C1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida LOC_Os02g36845.1 No alias Casparian strip membrane protein 7 OS=Oryza sativa... 0.03 Archaeplastida LOC_Os04g38690.1 No alias Casparian strip membrane protein 1 OS=Oryza rufipogon... 0.03 Archaeplastida LOC_Os04g58760.1 No alias Casparian strip membrane protein 1 OS=Oryza sativa... 0.03 Archaeplastida LOC_Os05g15630.1 No alias CASP-like protein BLE3 OS=Oryza sativa subsp. indica... 0.02 Archaeplastida LOC_Os06g12500.1 No alias Casparian strip membrane protein 3 OS=Oryza sativa... 0.04 Archaeplastida LOC_Os12g41690.1 No alias CASP-like protein 1B1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida MA_10431939g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.03 Archaeplastida MA_5227376g0010 No alias Casparian strip membrane protein 1 OS=Picea glauca... 0.03 Archaeplastida MA_5618864g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.06 Archaeplastida MA_64798g0010 No alias Casparian strip membrane protein 1 OS=Picea glauca... 0.03 Archaeplastida MA_67384g0020 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.04 Archaeplastida MA_90653g0010 No alias no hits & (original description: none) 0.03 Archaeplastida MA_93690g0010 No alias Casparian strip membrane protein 1 OS=Pinus taeda... 0.05 Archaeplastida MA_94788g0010 No alias CASP-like protein 1U1 OS=Picea sitchensis... 0.03 Archaeplastida Pp3c14_2270V3.1 No alias Uncharacterised protein family (UPF0497) 0.04 Archaeplastida Pp3c22_13920V3.1 No alias Uncharacterised protein family (UPF0497) 0.02 Archaeplastida Solyc01g067330.3.1 No alias CASP-like protein 1E1 OS=Glycine max... 0.05 Archaeplastida Solyc02g069730.3.1 No alias CASP-like protein 1B1 OS=Ricinus communis... 0.05 Archaeplastida Solyc02g088160.4.1 No alias Casparian strip membrane protein 3 OS=Oryza sativa... 0.04 Archaeplastida Solyc04g005620.3.1 No alias Casparian strip membrane protein 2 OS=Solanum demissum... 0.05 Archaeplastida Solyc05g007790.3.1 No alias Casparian strip membrane protein 2 OS=Solanum demissum... 0.01 Archaeplastida Solyc06g072550.3.1 No alias CASP-like protein 1F1 OS=Vitis vinifera... 0.01 Archaeplastida Solyc06g074230.3.1 No alias Casparian strip membrane protein 2 OS=Triphysaria... 0.04 Archaeplastida Solyc09g010200.4.1 No alias Casparian strip membrane protein 1 OS=Nicotiana tabacum... 0.05 Archaeplastida Solyc10g083250.2.1 No alias Casparian strip membrane protein 1 OS=Nicotiana tabacum... 0.05 Archaeplastida Zm00001e003216_P001 No alias CASP-like protein 1B1 OS=Zea mays (sp|b6tuh4|cspl2_maize : 130.0) 0.02 Archaeplastida Zm00001e006491_P001 No alias Casparian strip membrane protein 2 OS=Zea mays... 0.02 Archaeplastida Zm00001e015806_P001 No alias Casparian strip membrane protein 3 OS=Sorghum bicolor... 0.03 Archaeplastida Zm00001e017631_P001 No alias CASP-like protein 1E1 OS=Zea mays (sp|b4fap1|cspl4_maize : 254.0) 0.03 Archaeplastida Zm00001e024279_P001 No alias Casparian strip membrane protein 2 OS=Sorghum bicolor... 0.02 Archaeplastida Zm00001e026902_P001 No alias CASP-like protein 1C2 OS=Zea mays (sp|b6szu6|cspl5_maize : 227.0) 0.05 Archaeplastida Zm00001e033338_P001 No alias CASP-like protein 1D1 OS=Zea mays (sp|b6u361|cspl3_maize : 205.0) 0.02 Archaeplastida
Type GO Term Name Evidence Source

No GO annotation available for this sequence

Gb_12490 details

Gb_12490


Description : Mitochondrial import inner membrane translocase subunit TIM22-3 OS=Arabidopsis thaliana (sp|q6nku9|ti223_arath : 187.0)


Gene families : OG0003429 (Archaeplastida) Phylogenetic Tree(s): OG0003429_tree ,
OG_05_0003390 (LandPlants) Phylogenetic Tree(s): OG_05_0003390_tree ,
OG_06_0003585 (SeedPlants) Phylogenetic Tree(s): OG_06_0003585_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0006848 pyruvate transport IEP Neighborhood
BP GO:0006850 mitochondrial pyruvate transmembrane transport IEP Neighborhood
Type Description Actions
Neighborhood HRR: Gb_12490
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT4G26670 No alias Mitochondrial import inner membrane translocase subunit... 0.03 Archaeplastida
MA_43405g0010 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008649 rRNA methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!