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  5. Gb_12552

Gb_12552


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 590.0)


Gene families : OG0016275 (Archaeplastida) Phylogenetic Tree(s): OG0016275_tree ,
OG_05_0015817 (LandPlants) Phylogenetic Tree(s): OG_05_0015817_tree ,
OG_06_0015567 (SeedPlants) Phylogenetic Tree(s): OG_06_0015567_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_12552
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
Solyc04g064660.1.1 No alias Pentatricopeptide repeat-containing protein At3g21470... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 327 355
IPR002885 Pentatricopeptide_repeat 658 682
IPR002885 Pentatricopeptide_repeat 423 452
IPR002885 Pentatricopeptide_repeat 393 421
IPR002885 Pentatricopeptide_repeat 237 266
IPR002885 Pentatricopeptide_repeat 558 583
IPR002885 Pentatricopeptide_repeat 209 236
IPR002885 Pentatricopeptide_repeat 268 298
IPR002885 Pentatricopeptide_repeat 483 530
IPR002885 Pentatricopeptide_repeat 358 391
IPR002885 Pentatricopeptide_repeat 137 183
IPR002885 Pentatricopeptide_repeat 584 632
No external refs found!