Gb_12891


Description : rRNA pseudouridine synthase (RsuA)


Gene families : OG0003651 (Archaeplastida) Phylogenetic Tree(s): OG0003651_tree ,
OG_05_0007210 (LandPlants) Phylogenetic Tree(s): OG_05_0007210_tree ,
OG_06_0010034 (SeedPlants) Phylogenetic Tree(s): OG_06_0010034_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_12891
Cluster HCCA: Cluster_302

Target Alias Description ECC score Gene Family Method Actions
AT2G39140 SVR1 pseudouridine synthase family protein 0.03 Archaeplastida
LOC_Os03g05806.1 No alias rRNA pseudouridine synthase (RsuA) 0.04 Archaeplastida
MA_890533g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c7_13640V3.1 No alias pseudouridine synthase family protein 0.03 Archaeplastida
Smo45172 No alias RNA processing.RNA... 0.04 Archaeplastida
Solyc11g008360.3.1 No alias rRNA pseudouridine synthase (RsuA) 0.03 Archaeplastida
Zm00001e000423_P001 No alias rRNA pseudouridine synthase (RsuA) 0.06 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
MF GO:0051920 peroxiredoxin activity IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluD 149 292
IPR002942 S4_RNA-bd 86 128
No external refs found!