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  5. Gb_13135

Gb_13135


Description : Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis thaliana (sp|q9siv5|c3h19_arath : 262.0)


Gene families : OG0000906 (Archaeplastida) Phylogenetic Tree(s): OG0000906_tree ,
OG_05_0000582 (LandPlants) Phylogenetic Tree(s): OG_05_0000582_tree ,
OG_06_0001941 (SeedPlants) Phylogenetic Tree(s): OG_06_0001941_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_13135
Cluster HCCA: Cluster_306

Target Alias Description ECC score Gene Family Method Actions
AT2G16485 No alias nucleic acid binding;zinc ion binding;DNA binding 0.02 Archaeplastida
AT3G51120 No alias DNA binding;zinc ion binding;nucleic acid... 0.02 Archaeplastida
GSVIVT01018827001 No alias Zinc finger CCCH domain-containing protein 19... 0.05 Archaeplastida
GSVIVT01024181001 No alias Zinc finger CCCH domain-containing protein 19... 0.04 Archaeplastida
LOC_Os09g36090.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.02 Archaeplastida
LOC_Os10g36810.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.02 Archaeplastida
Mp4g08690.1 No alias protein factor (NERD) of non-canonical RdDM pathway 0.04 Archaeplastida
Pp3c15_12580V3.1 No alias DNA binding;zinc ion binding;nucleic acid... 0.03 Archaeplastida
Solyc02g084520.3.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc03g033630.3.1 No alias Zinc finger CCCH domain-containing protein 44... 0.03 Archaeplastida
Solyc11g062220.2.1 No alias Zinc finger CCCH domain-containing protein 19... 0.03 Archaeplastida
Zm00001e000091_P002 No alias protein factor (NERD) of non-canonical RdDM pathway 0.04 Archaeplastida
Zm00001e027036_P001 No alias Zinc finger CCCH domain-containing protein 19... 0.02 Archaeplastida
Zm00001e029059_P002 No alias protein factor (NERD) of non-canonical RdDM pathway 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR003121 SWIB_MDM2_domain 192 265
IPR004343 Plus-3_dom 337 430
No external refs found!