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  5. AT1G09660

AT1G09660


Description : RNA-binding KH domain-containing protein


Gene families : OG0001008 (Archaeplastida) Phylogenetic Tree(s): OG0001008_tree ,
OG_05_0000848 (LandPlants) Phylogenetic Tree(s): OG_05_0000848_tree ,
OG_06_0001767 (SeedPlants) Phylogenetic Tree(s): OG_06_0001767_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G09660
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g60260.2 No alias KH domain-containing protein SPIN1 OS=Oryza sativa... 0.06 Archaeplastida
Zm00001e019459_P001 No alias KH domain-containing protein SPIN1 OS=Oryza sativa... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001708 cell fate specification IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004146 dihydrofolate reductase activity IEP Neighborhood
MF GO:0004799 thymidylate synthase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005302 L-tyrosine transmembrane transporter activity IEP Neighborhood
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0005459 UDP-galactose transmembrane transporter activity IEP Neighborhood
MF GO:0005460 UDP-glucose transmembrane transporter activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006312 mitotic recombination IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006333 chromatin assembly or disassembly IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006760 folic acid-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006839 mitochondrial transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
MF GO:0008509 anion transmembrane transporter activity IEP Neighborhood
MF GO:0008514 organic anion transmembrane transporter activity IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009256 10-formyltetrahydrofolate metabolic process IEP Neighborhood
BP GO:0009257 10-formyltetrahydrofolate biosynthetic process IEP Neighborhood
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010082 regulation of root meristem growth IEP Neighborhood
BP GO:0010374 stomatal complex development IEP Neighborhood
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP Neighborhood
BP GO:0010393 galacturonan metabolic process IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0015171 amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015173 aromatic amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015179 L-amino acid transmembrane transporter activity IEP Neighborhood
MF GO:0015238 drug transmembrane transporter activity IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Neighborhood
BP GO:0015786 UDP-glucose transmembrane transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
CC GO:0015935 small ribosomal subunit IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Neighborhood
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
CC GO:0022627 cytosolic small ribosomal subunit IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032451 demethylase activity IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032875 regulation of DNA endoreduplication IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035514 DNA demethylase activity IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
MF GO:0042083 5,10-methylenetetrahydrofolate-dependent methyltransferase activity IEP Neighborhood
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Neighborhood
BP GO:0042558 pteridine-containing compound metabolic process IEP Neighborhood
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0042991 obsolete transcription factor import into nucleus IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0045488 pectin metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046653 tetrahydrofolate metabolic process IEP Neighborhood
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0048468 cell development IEP Neighborhood
BP GO:0048638 regulation of developmental growth IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051302 regulation of cell division IEP Neighborhood
BP GO:0051567 histone H3-K9 methylation IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0052541 plant-type cell wall cellulose metabolic process IEP Neighborhood
BP GO:0052546 cell wall pectin metabolic process IEP Neighborhood
BP GO:0061647 histone H3-K9 modification IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0080147 root hair cell development IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Neighborhood
BP GO:0090558 plant epidermis development IEP Neighborhood
BP GO:0098656 anion transmembrane transport IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
BP GO:2000280 regulation of root development IEP Neighborhood
InterPro domains Description Start Stop
IPR032377 STAR_dimer 41 79
No external refs found!