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  5. Gb_13517

Gb_13517


Description : Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana (sp|q8gyl7|pp361_arath : 339.0)


Gene families : OG0006806 (Archaeplastida) Phylogenetic Tree(s): OG0006806_tree ,
OG_05_0007343 (LandPlants) Phylogenetic Tree(s): OG_05_0007343_tree ,
OG_06_0007467 (SeedPlants) Phylogenetic Tree(s): OG_06_0007467_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_13517
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g17634.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.02 Archaeplastida
Mp3g16970.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.01 Archaeplastida
Pp3c22_3070V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
Solyc09g007200.4.1 No alias Pentatricopeptide repeat-containing protein At5g02830,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 282 312
IPR002885 Pentatricopeptide_repeat 472 493
IPR002885 Pentatricopeptide_repeat 196 252
IPR002885 Pentatricopeptide_repeat 314 361
No external refs found!