AT2G28000 (CH-CPN60A, CPN60A, SLP)

Aliases : CH-CPN60A, CPN60A, SLP

Description : chaperonin-60alpha

Gene families : OG0000342 (Archaeplastida) Phylogenetic Tree(s): OG0000342_tree ,
OG_05_0002717 (LandPlants) Phylogenetic Tree(s): OG_05_0002717_tree ,
OG_06_0003050 (SeedPlants) Phylogenetic Tree(s): OG_06_0003050_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G28000
Cluster	HCCA: Cluster_43

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00080200	evm_27.TU.AmTr_v1...	External stimuli response.temperature.Hsp...	0.06	Archaeplastida
AMTR_s00062p00185880	evm_27.TU.AmTr_v1...	External stimuli response.temperature.Hsp...	0.03	Archaeplastida
AMTR_s00106p00119930	evm_27.TU.AmTr_v1...	External stimuli response.temperature.Hsp...	0.05	Archaeplastida
Cpa\|evm.model.tig00001269.7	No alias	External stimuli response.temperature.Hsp...	0.01	Archaeplastida
Cre04.g231222	No alias	External stimuli response.temperature.Hsp...	0.09	Archaeplastida
Cre06.g309100	No alias	External stimuli response.temperature.Hsp...	0.05	Archaeplastida
Cre07.g339150	No alias	External stimuli response.temperature.Hsp...	0.12	Archaeplastida
Cre17.g741450	No alias	External stimuli response.temperature.Hsp...	0.04	Archaeplastida
GSVIVT01025490001	No alias	External stimuli response.temperature.Hsp...	0.14	Archaeplastida
GSVIVT01029025001	No alias	External stimuli response.temperature.Hsp...	0.04	Archaeplastida
GSVIVT01031526001	No alias	External stimuli response.temperature.Hsp...	0.2	Archaeplastida
LOC_Os06g02380.2	No alias	subunit beta of Cpn60 chaperonin complex. component...	0.12	Archaeplastida
LOC_Os09g38980.1	No alias	subunit alpha of Cpn60 chaperonin complex. component...	0.02	Archaeplastida
LOC_Os12g17910.1	No alias	subunit alpha of Cpn60 chaperonin complex. component...	0.04	Archaeplastida
MA_10436772g0010	No alias	chaperone (Hsp60)	0.03	Archaeplastida
MA_13240g0020	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_542957g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_97627g0010	No alias	Chaperonin 60 subunit beta 2, chloroplastic...	0.03	Archaeplastida
Mp1g21640.1	No alias	subunit beta of Cpn60 chaperonin complex. component...	0.06	Archaeplastida
Mp5g20470.1	No alias	subunit alpha of Cpn60 chaperonin complex. component...	0.05	Archaeplastida
Pp3c13_7040V3.1	No alias	heat shock protein 60	0.02	Archaeplastida
Pp3c16_4660V3.1	No alias	chaperonin 60 beta	0.09	Archaeplastida
Pp3c24_12180V3.1	No alias	chaperonin-60alpha	0.16	Archaeplastida
Pp3c26_2180V3.1	No alias	heat shock protein 60	0.02	Archaeplastida
Pp3c27_5110V3.1	No alias	chaperonin 60 beta	0.12	Archaeplastida
Pp3c4_22500V3.1	No alias	heat shock protein 60	0.09	Archaeplastida
Smo165043	No alias	External stimuli response.temperature.Hsp...	0.11	Archaeplastida
Solyc01g028810.3.1	No alias	subunit beta of Cpn60 chaperonin complex. component...	0.08	Archaeplastida
Solyc03g120850.4.1	No alias	subunit beta of Cpn60 chaperonin complex. component...	0.02	Archaeplastida
Solyc09g091180.3.1	No alias	chaperone (Hsp60)	0.11	Archaeplastida
Solyc11g069790.2.1	No alias	subunit alpha of Cpn60 chaperonin complex. component...	0.19	Archaeplastida
Zm00001e004641_P001	No alias	chaperone (Hsp60)	0.05	Archaeplastida
Zm00001e006438_P001	No alias	subunit alpha of Cpn60 chaperonin complex. component...	0.09	Archaeplastida
Zm00001e012733_P002	No alias	chaperone (Hsp60)	0.12	Archaeplastida
Zm00001e029825_P001	No alias	subunit beta of Cpn60 chaperonin complex. component...	0.05	Archaeplastida
Zm00001e031536_P001	No alias	subunit alpha of Cpn60 chaperonin complex. component...	0.03	Archaeplastida
Zm00001e032273_P004	No alias	chaperone (Hsp60)	0.04	Archaeplastida
Zm00001e036666_P003	No alias	subunit beta of Cpn60 chaperonin complex. component...	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
BP	GO:0006457	protein folding	TAS	Interproscan
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISS	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	IMP	Interproscan
BP	GO:0009658	chloroplast organization	RCA	Interproscan
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	RCA	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016226	iron-sulfur cluster assembly	RCA	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
BP	GO:0031163	metallo-sulfur cluster assembly	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044434	chloroplast part	None	Extended
CC	GO:0044435	plastid part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044445	cytosolic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0048481	plant ovule development	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0051186	cofactor metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
MF	GO:0004399	histidinol dehydrogenase activity	IEP	Neighborhood
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005507	copper ion binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005743	mitochondrial inner membrane	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006458	'de novo' protein folding	IEP	Neighborhood
BP	GO:0006595	polyamine metabolic process	IEP	Neighborhood
BP	GO:0006596	polyamine biosynthetic process	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006970	response to osmotic stress	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0008216	spermidine metabolic process	IEP	Neighborhood
BP	GO:0008219	cell death	IEP	Neighborhood
BP	GO:0008295	spermidine biosynthetic process	IEP	Neighborhood
BP	GO:0009117	nucleotide metabolic process	IEP	Neighborhood
BP	GO:0009165	nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0009259	ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0009266	response to temperature stimulus	IEP	Neighborhood
BP	GO:0009309	amine biosynthetic process	IEP	Neighborhood
BP	GO:0009314	response to radiation	IEP	Neighborhood
BP	GO:0009408	response to heat	IEP	Neighborhood
BP	GO:0009409	response to cold	IEP	Neighborhood
BP	GO:0009416	response to light stimulus	IEP	Neighborhood
BP	GO:0009624	response to nematode	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0009651	response to salt stress	IEP	Neighborhood
BP	GO:0009704	de-etiolation	IEP	Neighborhood
BP	GO:0010020	chloroplast fission	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010038	response to metal ion	IEP	Neighborhood
BP	GO:0010157	response to chlorate	IEP	Neighborhood
CC	GO:0010319	stromule	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016108	tetraterpenoid metabolic process	IEP	Neighborhood
BP	GO:0016109	tetraterpenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016116	carotenoid metabolic process	IEP	Neighborhood
BP	GO:0016117	carotenoid biosynthetic process	IEP	Neighborhood
BP	GO:0016556	mRNA modification	IEP	Neighborhood
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0019693	ribose phosphate metabolic process	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0031090	organelle membrane	IEP	Neighborhood
BP	GO:0031123	RNA 3'-end processing	IEP	Neighborhood
CC	GO:0031966	mitochondrial membrane	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
CC	GO:0034357	photosynthetic membrane	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	Neighborhood
CC	GO:0042651	thylakoid membrane	IEP	Neighborhood
BP	GO:0042780	tRNA 3'-end processing	IEP	Neighborhood
MF	GO:0042781	3'-tRNA processing endoribonuclease activity	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
BP	GO:0043085	positive regulation of catalytic activity	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
BP	GO:0043572	plastid fission	IEP	Neighborhood
BP	GO:0043628	ncRNA 3'-end processing	IEP	Neighborhood
BP	GO:0044093	positive regulation of molecular function	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044436	thylakoid part	IEP	Neighborhood
BP	GO:0045036	protein targeting to chloroplast	IEP	Neighborhood
BP	GO:0045037	protein import into chloroplast stroma	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	Neighborhood
BP	GO:0046686	response to cadmium ion	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0048285	organelle fission	IEP	Neighborhood
BP	GO:0048584	positive regulation of response to stimulus	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051084	'de novo' posttranslational protein folding	IEP	Neighborhood
BP	GO:0051085	chaperone cofactor-dependent protein refolding	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0051341	regulation of oxidoreductase activity	IEP	Neighborhood
BP	GO:0051353	positive regulation of oxidoreductase activity	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Neighborhood
BP	GO:0061077	chaperone-mediated protein folding	IEP	Neighborhood
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0071806	protein transmembrane transport	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	Neighborhood
BP	GO:0072598	protein localization to chloroplast	IEP	Neighborhood
BP	GO:0090143	nucleoid organization	IEP	Neighborhood
BP	GO:0090322	regulation of superoxide metabolic process	IEP	Neighborhood
BP	GO:0090407	organophosphate biosynthetic process	IEP	Neighborhood
BP	GO:0097164	ammonium ion metabolic process	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
BP	GO:1900407	regulation of cellular response to oxidative stress	IEP	Neighborhood
BP	GO:1900409	positive regulation of cellular response to oxidative stress	IEP	Neighborhood
BP	GO:1901031	regulation of response to reactive oxygen species	IEP	Neighborhood
BP	GO:1901033	positive regulation of response to reactive oxygen species	IEP	Neighborhood
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:1901668	regulation of superoxide dismutase activity	IEP	Neighborhood
BP	GO:1901671	positive regulation of superoxide dismutase activity	IEP	Neighborhood
BP	GO:1902882	regulation of response to oxidative stress	IEP	Neighborhood
BP	GO:1902884	positive regulation of response to oxidative stress	IEP	Neighborhood
BP	GO:1904833	positive regulation of removal of superoxide radicals	IEP	Neighborhood
BP	GO:2000121	regulation of removal of superoxide radicals	IEP	Neighborhood
BP	GO:2000379	positive regulation of reactive oxygen species metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002423	Cpn60/TCP-1	68	571

External Links

No external refs found!

AT2G28000 (CH-CPN60A, CPN60A, SLP)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation