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Gb_14217


Description : pre-mRNA-processing protein (PRP40A/B)


Gene families : OG0002768 (Archaeplastida) Phylogenetic Tree(s): OG0002768_tree ,
OG_05_0003591 (LandPlants) Phylogenetic Tree(s): OG_05_0003591_tree ,
OG_06_0004226 (SeedPlants) Phylogenetic Tree(s): OG_06_0004226_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_14217
Cluster HCCA: Cluster_328

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00227470 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 Archaeplastida
AT1G44910 ATPRP40A, PRP40A pre-mRNA-processing protein 40A 0.04 Archaeplastida
AT3G19670 ATPRP40B, PRP40B pre-mRNA-processing protein 40B 0.06 Archaeplastida
Cre07.g351000 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 Archaeplastida
GSVIVT01009302001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
LOC_Os01g34780.1 No alias pre-mRNA-processing protein (PRP40A/B) 0.03 Archaeplastida
Solyc07g022760.4.1 No alias pre-mRNA-processing protein (PRP40A/B) 0.03 Archaeplastida
Zm00001e020775_P002 No alias pre-mRNA-processing protein (PRP40A/B) 0.07 Archaeplastida
Zm00001e020778_P001 No alias pre-mRNA-processing protein (PRP40A/B) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001202 WW_dom 331 357
IPR001202 WW_dom 289 316
IPR002713 FF_domain 804 859
IPR002713 FF_domain 731 779
IPR002713 FF_domain 662 712
IPR002713 FF_domain 595 644
No external refs found!