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  5. Gb_14294

Gb_14294


Description : component SF3B1 of splicing factor 3B complex


Gene families : OG0002725 (Archaeplastida) Phylogenetic Tree(s): OG0002725_tree ,
OG_05_0002710 (LandPlants) Phylogenetic Tree(s): OG_05_0002710_tree ,
OG_06_0003259 (SeedPlants) Phylogenetic Tree(s): OG_06_0003259_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_14294
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AT5G64270 No alias splicing factor, putative 0.04 Archaeplastida
GSVIVT01025852001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.07 Archaeplastida
Gb_12533 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g05310.4 No alias component SF3B1 of splicing factor 3B complex 0.05 Archaeplastida
MA_11685g0010 No alias component SF3B1 of splicing factor 3B complex 0.06 Archaeplastida
Pp3c11_14450V3.1 No alias splicing factor, putative 0.02 Archaeplastida
Smo97336 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 Archaeplastida
Zm00001e013644_P003 No alias No annotation 0.04 Archaeplastida
Zm00001e025224_P001 No alias component SF3B1 of splicing factor 3B complex 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004559 alpha-mannosidase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006013 mannose metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR015016 SF3b_su1 292 422
No external refs found!