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AT2G28680


Description : RmlC-like cupins superfamily protein


Gene families : OG0000824 (Archaeplastida) Phylogenetic Tree(s): OG0000824_tree ,
OG_05_0000956 (LandPlants) Phylogenetic Tree(s): OG_05_0000956_tree ,
OG_06_0001330 (SeedPlants) Phylogenetic Tree(s): OG_06_0001330_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G28680
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
MA_3821g0010 No alias 11S globulin seed storage protein 2 OS=Sesamum indicum... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
MF GO:0045735 nutrient reservoir activity ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005887 integral component of plasma membrane IEP Neighborhood
BP GO:0006360 transcription by RNA polymerase I IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
CC GO:0015935 small ribosomal subunit IEP Neighborhood
CC GO:0022626 cytosolic ribosome IEP Neighborhood
CC GO:0022627 cytosolic small ribosomal subunit IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
BP GO:0042991 obsolete transcription factor import into nucleus IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
MF GO:0051119 sugar transmembrane transporter activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR006045 Cupin_1 196 338
IPR006045 Cupin_1 9 157
No external refs found!