Gb_14392

Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 607.0)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_14392

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00109p00094190	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g04780,...	0.02	Archaeplastida
AMTR_s00232p00000850	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At2g21090...	0.05	Archaeplastida
AT2G39620	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.01	Archaeplastida
AT3G26782	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.01	Archaeplastida
AT3G53360	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.01	Archaeplastida
AT5G08490	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.02	Archaeplastida
Gb_00852	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
Gb_02060	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_02808	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.07	Archaeplastida
Gb_02911	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.05	Archaeplastida
Gb_04419	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_04420	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.03	Archaeplastida
Gb_04446	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
Gb_05264	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
Gb_05354	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.05	Archaeplastida
Gb_05883	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
Gb_06115	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.06	Archaeplastida
Gb_06568	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.03	Archaeplastida
Gb_07570	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_07727	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
Gb_08118	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.03	Archaeplastida
Gb_08964	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.03	Archaeplastida
Gb_09361	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Gb_09410	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_09654	No alias	RNA editing factor (MEF13)	0.03	Archaeplastida
Gb_10713	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.04	Archaeplastida
Gb_10903	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Gb_11925	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.07	Archaeplastida
Gb_13227	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
Gb_13303	No alias	RNA editing factor (MEF19)	0.04	Archaeplastida
Gb_13405	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
Gb_15235	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_15506	No alias	RNA editing factor (OTP82)	0.11	Archaeplastida
Gb_15507	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.04	Archaeplastida
Gb_17095	No alias	Putative pentatricopeptide repeat-containing protein...	0.06	Archaeplastida
Gb_17379	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
Gb_17620	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_18436	No alias	Pentatricopeptide repeat-containing protein At4g33170...	0.04	Archaeplastida
Gb_18979	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_19299	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_19828	No alias	RNA editing factor (OTP82)	0.09	Archaeplastida
Gb_19924	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.06	Archaeplastida
Gb_20153	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_20456	No alias	Pentatricopeptide repeat-containing protein At3g24000,...	0.08	Archaeplastida
Gb_20503	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.06	Archaeplastida
Gb_20837	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.05	Archaeplastida
Gb_21442	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.09	Archaeplastida
Gb_21949	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
Gb_22477	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.06	Archaeplastida
Gb_23089	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
Gb_23671	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_24515	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.03	Archaeplastida
Gb_25029	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.05	Archaeplastida
Gb_25046	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
Gb_25359	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Gb_25737	No alias	RNA editing factor (MEF1)	0.04	Archaeplastida
Gb_25869	No alias	Pentatricopeptide repeat-containing protein At4g39530...	0.03	Archaeplastida
Gb_26340	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.17	Archaeplastida
Gb_26501	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_26723	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.02	Archaeplastida
Gb_27468	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
Gb_27521	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.06	Archaeplastida
Gb_27797	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.06	Archaeplastida
Gb_28030	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.06	Archaeplastida
Gb_28087	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
Gb_28343	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.05	Archaeplastida
Gb_28762	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_29534	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
Gb_29868	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_29872	No alias	RNA editing factor (MEF19). RNA editing factor (OTP82)	0.04	Archaeplastida
Gb_30096	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.05	Archaeplastida
Gb_30097	No alias	RNA editing factor (CRR21)	0.05	Archaeplastida
Gb_30147	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.08	Archaeplastida
Gb_30732	No alias	Pentatricopeptide repeat-containing protein At3g02330,...	0.02	Archaeplastida
Gb_30991	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_32447	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.07	Archaeplastida
Gb_33111	No alias	Pentatricopeptide repeat-containing protein At2g22070...	0.03	Archaeplastida
Gb_33719	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_34963	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
Gb_36085	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_36177	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.03	Archaeplastida
Gb_36178	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
Gb_36434	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.05	Archaeplastida
Gb_36614	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
Gb_37554	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Gb_38248	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.07	Archaeplastida
Gb_38292	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.11	Archaeplastida
Gb_38297	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.04	Archaeplastida
Gb_38417	No alias	OTP70 plastidial RNA splicing factor	0.03	Archaeplastida
Gb_38504	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Gb_38750	No alias	RNA editing factor (OTP82)	0.03	Archaeplastida
Gb_39702	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Gb_39725	No alias	Putative pentatricopeptide repeat-containing protein...	0.06	Archaeplastida
Gb_40381	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
Gb_40749	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
Gb_41234	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	Archaeplastida
Gb_41341	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
LOC_Os03g32620.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.02	Archaeplastida
Smo90480	No alias	Pentatricopeptide repeat-containing protein At3g02330,...	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0034061	DNA polymerase activity	IEP	Neighborhood
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	424	449
IPR002885	Pentatricopeptide_repeat	356	379
IPR002885	Pentatricopeptide_repeat	79	126
IPR002885	Pentatricopeptide_repeat	179	227
IPR002885	Pentatricopeptide_repeat	280	328
IPR032867	DYW_dom	454	578

External Links

No external refs found!

Gb_14392

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation