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Description : Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana (sp|q9fix3|pp407_arath : 283.0)
Gene families : OG0008885 (Archaeplastida) Phylogenetic Tree(s): OG0008885_tree ,
OG_05_0009763 (LandPlants) Phylogenetic Tree(s): OG_05_0009763_tree ,
OG_06_0005429 (SeedPlants) Phylogenetic Tree(s): OG_06_0005429_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Gb_15596 | |
| Cluster | HCCA: Cluster_241 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003677 | DNA binding | IEP | Neighborhood |
| MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Neighborhood |
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006298 | mismatch repair | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Neighborhood |
| BP | GO:0009451 | RNA modification | IEP | Neighborhood |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Neighborhood |
| MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Neighborhood |
| MF | GO:0030983 | mismatched DNA binding | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 605 | 637 |
| IPR002885 | Pentatricopeptide_repeat | 710 | 741 |
| IPR002885 | Pentatricopeptide_repeat | 259 | 308 |
| IPR002885 | Pentatricopeptide_repeat | 540 | 587 |
| IPR002885 | Pentatricopeptide_repeat | 330 | 378 |
| IPR002885 | Pentatricopeptide_repeat | 399 | 448 |
| IPR002885 | Pentatricopeptide_repeat | 510 | 536 |
| IPR002885 | Pentatricopeptide_repeat | 473 | 499 |
| No external refs found! |