Gb_15878


Description : transcription factor (mTERF)


Gene families : OG0000097 (Archaeplastida) Phylogenetic Tree(s): OG0000097_tree ,
OG_05_0000048 (LandPlants) Phylogenetic Tree(s): OG_05_0000048_tree ,
OG_06_0013813 (SeedPlants) Phylogenetic Tree(s): OG_06_0013813_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_15878
Cluster HCCA: Cluster_287

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00114980 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AMTR_s00010p00117910 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.05 Archaeplastida
AMTR_s00010p00225110 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 Archaeplastida
AMTR_s00010p00225250 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 Archaeplastida
AMTR_s00010p00225430 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 Archaeplastida
AMTR_s00010p00230750 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AMTR_s00010p00236880 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.06 Archaeplastida
AMTR_s00010p00239860 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 Archaeplastida
AMTR_s00010p00255890 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 Archaeplastida
AMTR_s00038p00175390 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AMTR_s00066p00157030 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.05 Archaeplastida
AMTR_s00066p00157220 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 Archaeplastida
AMTR_s00084p00087230 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.06 Archaeplastida
AMTR_s00126p00036100 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.06 Archaeplastida
AMTR_s00126p00036130 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 Archaeplastida
AMTR_s00126p00036170 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.04 Archaeplastida
AMTR_s00126p00036560 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.03 Archaeplastida
AMTR_s00871p00002780 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.02 Archaeplastida
AMTR_s01293p00010460 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
AMTR_s01360p00009540 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle... 0.07 Archaeplastida
AT5G07900 No alias Mitochondrial transcription termination factor family protein 0.02 Archaeplastida
GSVIVT01022213001 No alias RNA biosynthesis.organelle... 0.03 Archaeplastida
GSVIVT01036787001 No alias RNA biosynthesis.organelle... 0.03 Archaeplastida
Gb_07257 No alias TAC15 cofactor of plastid-encoded RNA polymerase.... 0.05 Archaeplastida
Gb_31439 No alias transcription factor (mTERF) 0.03 Archaeplastida
LOC_Os02g51450.2 No alias transcription factor (mTERF) 0.02 Archaeplastida
LOC_Os04g54510.1 No alias transcription factor (mTERF) 0.02 Archaeplastida
LOC_Os05g33440.1 No alias transcription factor (mTERF) 0.04 Archaeplastida
LOC_Os05g33460.2 No alias transcription factor (mTERF) 0.03 Archaeplastida
LOC_Os05g34160.1 No alias transcription factor (mTERF) 0.04 Archaeplastida
LOC_Os06g12070.1 No alias transcription factor (mTERF) 0.02 Archaeplastida
LOC_Os06g12080.1 No alias transcription factor (mTERF) 0.02 Archaeplastida
LOC_Os07g24090.1 No alias transcription factor (mTERF) 0.02 Archaeplastida
LOC_Os11g14130.1 No alias transcription factor (mTERF) 0.06 Archaeplastida
MA_192398g0010 No alias transcription factor (mTERF) 0.04 Archaeplastida
MA_31885g0010 No alias transcription factor (mTERF) 0.03 Archaeplastida
MA_493420g0010 No alias transcription factor (mTERF) 0.03 Archaeplastida
MA_7539255g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_92135g0010 No alias transcription factor (mTERF) 0.04 Archaeplastida
Mp1g21970.1 No alias transcription factor (mTERF) 0.02 Archaeplastida
Pp3c4_13990V3.1 No alias Mitochondrial transcription termination factor family protein 0.02 Archaeplastida
Solyc02g067960.3.1 No alias transcription factor (mTERF) 0.04 Archaeplastida
Solyc02g082010.3.1 No alias transcription factor (mTERF) 0.05 Archaeplastida
Solyc04g011700.2.1 No alias transcription factor (mTERF) 0.04 Archaeplastida
Solyc04g051880.3.1 No alias transcription factor (mTERF) 0.03 Archaeplastida
Solyc04g072500.1.1 No alias transcription factor (mTERF) 0.03 Archaeplastida
Solyc04g072530.2.1 No alias transcription factor (mTERF) 0.03 Archaeplastida
Solyc04g072550.3.1 No alias transcription factor (mTERF) 0.03 Archaeplastida
Zm00001e022322_P001 No alias transcription factor (mTERF) 0.03 Archaeplastida
Zm00001e027097_P001 No alias transcription factor (mTERF) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Neighborhood
CC GO:0005789 endoplasmic reticulum membrane IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
MF GO:0016229 steroid dehydrogenase activity IEP Neighborhood
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
InterPro domains Description Start Stop
IPR003690 MTERF 113 199
IPR003690 MTERF 97 395
No external refs found!