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  5. AT2G30340

AT2G30340 (LBD13)


Aliases : LBD13

Description : LOB domain-containing protein 13


Gene families : OG0000101 (Archaeplastida) Phylogenetic Tree(s): OG0000101_tree ,
OG_05_0000037 (LandPlants) Phylogenetic Tree(s): OG_05_0000037_tree ,
OG_06_0002612 (SeedPlants) Phylogenetic Tree(s): OG_06_0002612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G30340
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00241970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
AMTR_s00076p00127530 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
AMTR_s00080p00153120 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
AT1G06280 LBD2 LOB domain-containing protein 2 0.05 Archaeplastida
AT1G31320 LBD4 LOB domain-containing protein 4 0.04 Archaeplastida
AT1G65620 AS2 Lateral organ boundaries (LOB) domain family protein 0.05 Archaeplastida
AT1G72980 LBD7 LOB domain-containing protein 7 0.04 Archaeplastida
AT2G28500 LBD11 LOB domain-containing protein 11 0.05 Archaeplastida
GSVIVT01003547001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01010625001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01016328001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.06 Archaeplastida
GSVIVT01016330001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01016334001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
GSVIVT01016335001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01018486001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
GSVIVT01024662001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01025128001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01032592001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01032714001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01032752001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01032779001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
Gb_16914 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_19720 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_20676 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_21467 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Gb_22180 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_23794 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_29853 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_38119 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
LOC_Os01g07480.2 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
LOC_Os05g07270.1 No alias transcription factor (AS2/LOB) 0.09 Archaeplastida
LOC_Os05g27980.1 No alias transcription factor (AS2/LOB) 0.08 Archaeplastida
LOC_Os09g19950.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_10430986g0010 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
MA_10434782g0020 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_127139g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_16891g0010 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
MA_16891g0020 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
MA_290245g0010 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
MA_292200g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_88711g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_9412105g0010 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Pp3c19_19400V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.02 Archaeplastida
Pp3c19_19610V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.02 Archaeplastida
Pp3c20_10200V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.04 Archaeplastida
Pp3c22_5950V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.04 Archaeplastida
Pp3c23_14630V3.1 No alias LOB domain-containing protein 13 0.04 Archaeplastida
Pp3c4_18330V3.1 No alias LOB domain-containing protein 27 0.02 Archaeplastida
Solyc01g044520.2.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc01g109240.3.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc02g069440.3.1 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Solyc02g087570.1.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Solyc03g112430.1.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc05g048740.3.1 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
Solyc06g005090.3.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc06g007390.4.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc06g050430.3.1 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
Solyc06g071660.3.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Solyc06g082310.3.1 No alias transcription factor (AS2/LOB) 0.13 Archaeplastida
Solyc06g082430.2.1 No alias transcription factor (AS2/LOB) 0.18 Archaeplastida
Solyc11g072470.3.1 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Solyc12g010810.1.1 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Zm00001e016785_P005 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e019004_P002 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Zm00001e026736_P001 No alias transcription factor (AS2/LOB) 0.09 Archaeplastida
Zm00001e030195_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e031510_P001 No alias transcription factor (AS2/LOB) 0.08 Archaeplastida
Zm00001e038429_P001 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0016020 membrane IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
CC GO:0000323 lytic vacuole IEP Neighborhood
CC GO:0000325 plant-type vacuole IEP Neighborhood
MF GO:0003680 AT DNA binding IEP Neighborhood
MF GO:0004311 farnesyltranstransferase activity IEP Neighborhood
MF GO:0004372 glycine hydroxymethyltransferase activity IEP Neighborhood
MF GO:0004536 deoxyribonuclease activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005740 mitochondrial envelope IEP Neighborhood
BP GO:0006085 acetyl-CoA biosynthetic process IEP Neighborhood
BP GO:0006563 L-serine metabolic process IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
MF GO:0008417 fucosyltransferase activity IEP Neighborhood
MF GO:0008422 beta-glucosidase activity IEP Neighborhood
MF GO:0008446 GDP-mannose 4,6-dehydratase activity IEP Neighborhood
MF GO:0008825 cyclopropane-fatty-acyl-phospholipid synthase activity IEP Neighborhood
CC GO:0009505 plant-type cell wall IEP Neighborhood
BP GO:0009647 skotomorphogenesis IEP Neighborhood
MF GO:0009672 auxin:proton symporter activity IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0009743 response to carbohydrate IEP Neighborhood
BP GO:0009744 response to sucrose IEP Neighborhood
BP GO:0009746 response to hexose IEP Neighborhood
BP GO:0009749 response to glucose IEP Neighborhood
BP GO:0009750 response to fructose IEP Neighborhood
BP GO:0009832 plant-type cell wall biogenesis IEP Neighborhood
BP GO:0009834 plant-type secondary cell wall biogenesis IEP Neighborhood
CC GO:0009925 basal plasma membrane IEP Neighborhood
BP GO:0009958 positive gravitropism IEP Neighborhood
BP GO:0010306 rhamnogalacturonan II biosynthetic process IEP Neighborhood
MF GO:0010329 auxin efflux transmembrane transporter activity IEP Neighborhood
BP GO:0010396 rhamnogalacturonan II metabolic process IEP Neighborhood
BP GO:0010453 regulation of cell fate commitment IEP Neighborhood
BP GO:0010455 positive regulation of cell fate commitment IEP Neighborhood
MF GO:0015926 glucosidase activity IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0019137 thioglucosidase activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0034284 response to monosaccharide IEP Neighborhood
BP GO:0034285 response to disaccharide IEP Neighborhood
MF GO:0035252 UDP-xylosyltransferase activity IEP Neighborhood
BP GO:0035384 thioester biosynthetic process IEP Neighborhood
MF GO:0042285 xylosyltransferase activity IEP Neighborhood
BP GO:0042546 cell wall biogenesis IEP Neighborhood
CC GO:0042807 central vacuole IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0045597 positive regulation of cell differentiation IEP Neighborhood
BP GO:0046685 response to arsenic-containing substance IEP Neighborhood
MF GO:0046910 pectinesterase inhibitor activity IEP Neighborhood
BP GO:0048766 root hair initiation IEP Neighborhood
BP GO:0048829 root cap development IEP Neighborhood
BP GO:0052325 cell wall pectin biosynthetic process IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071616 acyl-CoA biosynthetic process IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
CC GO:0071944 cell periphery IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:1990837 sequence-specific double-stranded DNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 52 149
No external refs found!