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  5. Gb_16072

Gb_16072


Description : RNA editing factor (OTP82)


Gene families : OG0008686 (Archaeplastida) Phylogenetic Tree(s): OG0008686_tree ,
OG_05_0056980 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0049933 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_16072
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
Gb_21016 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_25868 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_27291 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_35467 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_129805g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.03 Archaeplastida
MA_130999g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.17 Archaeplastida
MA_137736g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_820066g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.11 Archaeplastida
Smo125582 No alias Pentatricopeptide repeat-containing protein At1g50270... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 604 627
IPR002885 Pentatricopeptide_repeat 138 163
IPR002885 Pentatricopeptide_repeat 298 325
IPR002885 Pentatricopeptide_repeat 239 266
IPR002885 Pentatricopeptide_repeat 501 528
IPR002885 Pentatricopeptide_repeat 267 295
IPR002885 Pentatricopeptide_repeat 164 211
IPR002885 Pentatricopeptide_repeat 326 373
IPR002885 Pentatricopeptide_repeat 529 577
IPR002885 Pentatricopeptide_repeat 427 475
IPR032867 DYW_dom 702 826
No external refs found!