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  5. Gb_16096

Gb_16096


Description : Pentatricopeptide repeat-containing protein At5g62370 OS=Arabidopsis thaliana (sp|q9lva2|pp443_arath : 466.0)


Gene families : OG0007872 (Archaeplastida) Phylogenetic Tree(s): OG0007872_tree ,
OG_05_0006137 (LandPlants) Phylogenetic Tree(s): OG_05_0006137_tree ,
OG_06_0003970 (SeedPlants) Phylogenetic Tree(s): OG_06_0003970_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_16096
Cluster HCCA: Cluster_328

Target Alias Description ECC score Gene Family Method Actions
MA_10430723g0010 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.04 Archaeplastida
MA_10436753g0030 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004819 glutamine-tRNA ligase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 618 650
IPR002885 Pentatricopeptide_repeat 512 544
IPR002885 Pentatricopeptide_repeat 162 194
IPR002885 Pentatricopeptide_repeat 841 873
IPR002885 Pentatricopeptide_repeat 204 230
IPR002885 Pentatricopeptide_repeat 989 1017
IPR002885 Pentatricopeptide_repeat 306 355
IPR002885 Pentatricopeptide_repeat 881 929
IPR002885 Pentatricopeptide_repeat 236 285
IPR002885 Pentatricopeptide_repeat 446 493
IPR002885 Pentatricopeptide_repeat 551 600
IPR002885 Pentatricopeptide_repeat 726 775
IPR002885 Pentatricopeptide_repeat 656 704
IPR002885 Pentatricopeptide_repeat 376 425
IPR002885 Pentatricopeptide_repeat 950 986
No external refs found!