AT2G30620

Description : winged-helix DNA-binding transcription factor family protein

Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree ,
OG_05_0000417 (LandPlants) Phylogenetic Tree(s): OG_05_0000417_tree ,
OG_06_0000288 (SeedPlants) Phylogenetic Tree(s): OG_06_0000288_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G30620
Cluster	HCCA: Cluster_164

Target	Alias	Description	ECC score	Gene Family Method
Cre13.g567450	No alias	Chromatin organisation.histones.H1 linker histone	0.05	Archaeplastida
GSVIVT01028074001	No alias	Chromatin organisation.histones.H1 linker histone	0.03	Archaeplastida
Gb_02738	No alias	linker histone (H1)	0.06	Archaeplastida
Gb_03348	No alias	linker histone (H1)	0.05	Archaeplastida
LOC_Os04g18090.1	No alias	linker histone (H1)	0.11	Archaeplastida
LOC_Os07g08710.1	No alias	linker histone (H1)	0.04	Archaeplastida
MA_102457g0010	No alias	linker histone (H1)	0.03	Archaeplastida
MA_10436125g0010	No alias	linker histone (H1)	0.04	Archaeplastida
MA_500183g0010	No alias	linker histone (H1)	0.03	Archaeplastida
MA_6021364g0010	No alias	linker histone (H1)	0.07	Archaeplastida
MA_6409g0010	No alias	linker histone (H1)	0.03	Archaeplastida
Mp6g03150.1	No alias	linker histone (H1)	0.05	Archaeplastida
Pp3c18_19330V3.1	No alias	winged-helix DNA-binding transcription factor family protein	0.03	Archaeplastida
Solyc09g066100.3.1	No alias	linker histone (H1)	0.03	Archaeplastida
Solyc09g083380.4.1	No alias	linker histone (H1)	0.04	Archaeplastida
Zm00001e006018_P006	No alias	linker histone (H1)	0.03	Archaeplastida
Zm00001e007189_P001	No alias	linker histone (H1)	0.04	Archaeplastida
Zm00001e011857_P001	No alias	linker histone (H1)	0.03	Archaeplastida
Zm00001e011859_P001	No alias	linker histone (H1)	0.06	Archaeplastida
Zm00001e032965_P005	No alias	linker histone (H1)	0.04	Archaeplastida
Zm00001e036602_P004	No alias	linker histone (H1)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	ISS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005739	mitochondrion	IDA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034622	cellular protein-containing complex assembly	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex subunit organization	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Neighborhood
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Neighborhood
CC	GO:0005834	heterotrimeric G-protein complex	IEP	Neighborhood
BP	GO:0006284	base-excision repair	IEP	Neighborhood
BP	GO:0006555	methionine metabolic process	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0008652	cellular amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009086	methionine biosynthetic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
BP	GO:0032880	regulation of protein localization	IEP	Neighborhood
MF	GO:0035064	methylated histone binding	IEP	Neighborhood
MF	GO:0042393	histone binding	IEP	Neighborhood
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Neighborhood
BP	GO:0051604	protein maturation	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
MF	GO:0140030	modification-dependent protein binding	IEP	Neighborhood
MF	GO:0140034	methylation-dependent protein binding	IEP	Neighborhood
BP	GO:1901605	alpha-amino acid metabolic process	IEP	Neighborhood
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	Neighborhood
CC	GO:1905360	GTPase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	62	127

External Links

No external refs found!

AT2G30620

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation