Gb_16516

Description : component RPS15 of SSU proteome

Gene families : OG0002089 (Archaeplastida) Phylogenetic Tree(s): OG0002089_tree ,
OG_05_0002523 (LandPlants) Phylogenetic Tree(s): OG_05_0002523_tree ,
OG_06_0002663 (SeedPlants) Phylogenetic Tree(s): OG_06_0002663_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_16516
Cluster	HCCA: Cluster_323

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00076070	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	Archaeplastida
AT1G04270	RPS15	cytosolic ribosomal protein S15	0.17	Archaeplastida
AT5G09510	No alias	Ribosomal protein S19 family protein	0.12	Archaeplastida
Cpa\|evm.model.tig00020830.61	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
Cre08.g360900	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.18	Archaeplastida
GSVIVT01000754001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.19	Archaeplastida
GSVIVT01018113001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.15	Archaeplastida
LOC_Os03g58430.1	No alias	component RPS15 of SSU proteome	0.15	Archaeplastida
LOC_Os07g08660.1	No alias	component RPS15 of SSU proteome	0.15	Archaeplastida
MA_14543g0010	No alias	component RPS15 of SSU proteome	0.05	Archaeplastida
MA_18691g0010	No alias	40S ribosomal protein S15 OS=Picea mariana...	0.08	Archaeplastida
Mp3g15000.1	No alias	component RPS15 of SSU proteome	0.16	Archaeplastida
Pp3c12_9180V3.1	No alias	Ribosomal protein S19 family protein	0.14	Archaeplastida
Pp3c13_19770V3.1	No alias	Ribosomal protein S19 family protein	0.02	Archaeplastida
Pp3c3_23700V3.1	No alias	Ribosomal protein S19 family protein	0.1	Archaeplastida
Pp3c4_15250V3.1	No alias	Ribosomal protein S19 family protein	0.13	Archaeplastida
Smo172403	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
Solyc02g082000.3.1	No alias	component RPS15 of SSU proteome	0.19	Archaeplastida
Solyc09g083370.3.1	No alias	component RPS15 of SSU proteome	0.11	Archaeplastida
Zm00001e011449_P001	No alias	component RPS15 of SSU proteome	0.14	Archaeplastida
Zm00001e011450_P001	No alias	component RPS15 of SSU proteome	0.09	Archaeplastida
Zm00001e032961_P001	No alias	component RPS15 of SSU proteome	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
MF	GO:0003682	chromatin binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
CC	GO:0035145	exon-exon junction complex	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002222	Ribosomal_S19	49	134

External Links

No external refs found!

Gb_16516

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation