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  5. Gb_16624

Gb_16624


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 406.0)


Gene families : OG0000054 (Archaeplastida) Phylogenetic Tree(s): OG0000054_tree ,
OG_05_0000126 (LandPlants) Phylogenetic Tree(s): OG_05_0000126_tree ,
OG_06_0000049 (SeedPlants) Phylogenetic Tree(s): OG_06_0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_16624
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
Gb_02021 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Gb_03159 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_03181 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_04615 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.12 Archaeplastida
Gb_04681 No alias Uncharacterized mitochondrial protein AtMg00820... 0.07 Archaeplastida
Gb_04745 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.05 Archaeplastida
Gb_05895 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.14 Archaeplastida
Gb_05914 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.04 Archaeplastida
Gb_06309 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Gb_06715 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.1 Archaeplastida
Gb_07443 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Gb_10172 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_12163 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_13694 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_14369 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.15 Archaeplastida
Gb_17625 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_18985 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_19106 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_22939 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 Archaeplastida
Gb_25298 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_25800 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.15 Archaeplastida
Gb_26797 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_28245 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_29290 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_29932 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 Archaeplastida
Gb_30484 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_30542 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_30851 No alias no hits & (original description: none) 0.08 Archaeplastida
Gb_31472 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.11 Archaeplastida
Gb_31929 No alias Uncharacterized mitochondrial protein AtMg00820... 0.04 Archaeplastida
Gb_32087 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.05 Archaeplastida
Gb_33741 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_34088 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_34818 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_36407 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_37683 No alias no hits & (original description: none) 0.11 Archaeplastida
Gb_37914 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.07 Archaeplastida
Gb_41823 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR013103 RVT_2 49 290
No external refs found!