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  5. Gb_16635

Gb_16635


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 584.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0056495 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0049413 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_16635
Cluster HCCA: Cluster_376

Target Alias Description ECC score Gene Family Method Actions
AT3G46790 CRR2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01032721001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 Archaeplastida
LOC_Os09g07780.1 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.1 Archaeplastida
LOC_Os10g40920.1 No alias RNA editing factor (MEF13) 0.03 Archaeplastida
LOC_Os11g01860.1 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Smo126194 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005216 ion channel activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015276 ligand-gated ion channel activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022834 ligand-gated channel activity IEP Neighborhood
MF GO:0022836 gated channel activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022839 ion gated channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 207 232
IPR002885 Pentatricopeptide_repeat 470 494
IPR002885 Pentatricopeptide_repeat 235 265
IPR002885 Pentatricopeptide_repeat 131 178
IPR002885 Pentatricopeptide_repeat 395 444
IPR002885 Pentatricopeptide_repeat 294 341
IPR032867 DYW_dom 569 693
No external refs found!