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  5. Gb_17075

Gb_17075


Description : chromatin remodeling factor (ERCC6)


Gene families : OG0004952 (Archaeplastida) Phylogenetic Tree(s): OG0004952_tree ,
OG_05_0005405 (LandPlants) Phylogenetic Tree(s): OG_05_0005405_tree ,
OG_06_0005202 (SeedPlants) Phylogenetic Tree(s): OG_06_0005202_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_17075
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AT5G63950 CHR24 chromatin remodeling 24 0.06 Archaeplastida
Cpa|evm.model.tig00000441.21 No alias Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cpa|evm.model.tig00001292.5 No alias Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.04 Archaeplastida
Cre03.g183350 No alias Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01026450001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
LOC_Os04g59624.2 No alias chromatin remodeling factor (ERCC6) 0.05 Archaeplastida
MA_18372g0010 No alias Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana... 0.13 Archaeplastida
MA_18372g0020 No alias Protein CHROMATIN REMODELING 24 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp1g29760.1 No alias chromatin remodeling factor (ERCC6) 0.08 Archaeplastida
Pp3c14_20620V3.1 No alias chromatin remodeling 24 0.05 Archaeplastida
Pp3c2_11030V3.1 No alias chromatin remodeling 24 0.07 Archaeplastida
Solyc01g068280.3.1 No alias chromatin remodeling factor (ERCC6) 0.07 Archaeplastida
Zm00001e007521_P001 No alias chromatin remodeling factor (ERCC6) 0.09 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
CC GO:0000808 origin recognition complex IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005664 nuclear origin of replication recognition complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045132 meiotic chromosome segregation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0098813 nuclear chromosome segregation IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR000330 SNF2_N 1 131
IPR001650 Helicase_C 184 294
No external refs found!