Gb_17428


Description : Pentatricopeptide repeat-containing protein At4g04370 OS=Arabidopsis thaliana (sp|q9xe98|pp303_arath : 383.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_17428
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
GSVIVT01005260001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
GSVIVT01017823001 No alias Pentatricopeptide repeat-containing protein At2g36980,... 0.03 Archaeplastida
LOC_Os01g15530.1 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.04 Archaeplastida
LOC_Os04g02850.1 No alias RNA editing factor (OTP84) 0.03 Archaeplastida
LOC_Os09g39970.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os12g30620.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.05 Archaeplastida
Solyc11g006700.1.1 No alias Pentatricopeptide repeat-containing protein At5g04780,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 277 324
IPR002885 Pentatricopeptide_repeat 479 516
IPR002885 Pentatricopeptide_repeat 378 425
IPR002885 Pentatricopeptide_repeat 175 223
IPR002885 Pentatricopeptide_repeat 75 122
IPR002885 Pentatricopeptide_repeat 251 276
IPR002885 Pentatricopeptide_repeat 352 376
No external refs found!