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  5. Gb_17836

Gb_17836


Description : 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis thaliana (sp|q0wrj2|tc10a_arath : 139.0)


Gene families : OG0000553 (Archaeplastida) Phylogenetic Tree(s): OG0000553_tree ,
OG_05_0000993 (LandPlants) Phylogenetic Tree(s): OG_05_0000993_tree ,
OG_06_0005943 (SeedPlants) Phylogenetic Tree(s): OG_06_0005943_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_17836
Cluster HCCA: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
Gb_06706 No alias 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis... 0.02 Archaeplastida
Gb_10045 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_18260 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_18262 No alias 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis... 0.04 Archaeplastida
MA_10216834g0010 No alias 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis... 0.05 Archaeplastida
MA_10429041g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10431393g0010 No alias 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis... 0.03 Archaeplastida
MA_115712g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_29607g0010 No alias 3-dehydrosphinganine reductase TSC10A OS=Arabidopsis... 0.03 Archaeplastida
MA_66037g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_681548g0010 No alias 3-dehydrosphinganine reductase TSC10B OS=Arabidopsis... 0.04 Archaeplastida
MA_776612g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_9332825g0010 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016872 intramolecular lyase activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR002347 SDR_fam 82 277
No external refs found!