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  5. Gb_18015

Gb_18015


Description : Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana (sp|q9smz2|pp347_arath : 627.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000064 (SeedPlants) Phylogenetic Tree(s): OG_06_0000064_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18015
Cluster HCCA: Cluster_635

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00270380 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00014p00068600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g43980,... 0.02 Archaeplastida
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00077p00031710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
AMTR_s00109p00094190 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.02 Archaeplastida
AMTR_s00130p00019530 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
AT3G18970 MEF20 mitochondrial editing factor 20 0.03 Archaeplastida
AT3G26540 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G18840 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Archaeplastida
GSVIVT01000244001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01000968001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
GSVIVT01003957001 No alias Pentatricopeptide repeat-containing protein At5g65570... 0.02 Archaeplastida
GSVIVT01004939001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01007937001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
GSVIVT01008173001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.02 Archaeplastida
GSVIVT01009789001 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.02 Archaeplastida
GSVIVT01009866001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 Archaeplastida
GSVIVT01010125001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01011501001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.06 Archaeplastida
GSVIVT01011735001 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.04 Archaeplastida
GSVIVT01017209001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
GSVIVT01018098001 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
GSVIVT01021023001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01021246001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
GSVIVT01021268001 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.03 Archaeplastida
GSVIVT01022230001 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 Archaeplastida
GSVIVT01022894001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 Archaeplastida
GSVIVT01023644001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 Archaeplastida
GSVIVT01023971001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
GSVIVT01024493001 No alias Pentatricopeptide repeat-containing protein At4g39952,... 0.04 Archaeplastida
GSVIVT01025639001 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.11 Archaeplastida
GSVIVT01026141001 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
GSVIVT01027839001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01029347001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01030080001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01030248001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01031733001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
GSVIVT01032394001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
GSVIVT01032994001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01033304001 No alias Pentatricopeptide repeat-containing protein At2g02980,... 0.05 Archaeplastida
GSVIVT01033389001 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
GSVIVT01033837001 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
GSVIVT01036511001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
GSVIVT01036943001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.04 Archaeplastida
GSVIVT01036975001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.06 Archaeplastida
GSVIVT01037332001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
GSVIVT01037562001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_28038 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_28390 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_32457 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_10426444g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_135075g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_81514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Pp3c19_930V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Archaeplastida
Smo87961 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc01g081110.4.1 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
Solyc01g097670.4.1 No alias RNA editing factor (ECD1) 0.03 Archaeplastida
Solyc03g111210.4.1 No alias RNA editing factor (OTP80) 0.03 Archaeplastida
Solyc09g082450.1.1 No alias RNA editing factor (YS1) 0.02 Archaeplastida
Solyc11g008940.1.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Solyc11g066920.1.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Solyc12g006575.1.1 No alias RNA editing factor (OTP82) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 606 730
IPR002885 Pentatricopeptide_repeat 231 277
IPR002885 Pentatricopeptide_repeat 332 379
IPR002885 Pentatricopeptide_repeat 433 479
IPR002885 Pentatricopeptide_repeat 130 177
IPR002885 Pentatricopeptide_repeat 577 602
IPR002885 Pentatricopeptide_repeat 508 531
No external refs found!