Gb_18301


Description : CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana (sp|q8l7c2|cfm2_arath : 196.0)


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0028892 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0027288 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18301
Cluster HCCA: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265220 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00079p00107040 evm_27.TU.AmTr_v1... CRM-domain containing factor CFM3,... 0.03 Archaeplastida
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.06 Archaeplastida
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.05 Archaeplastida
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.07 Archaeplastida
AT4G14510 ATCFM3B, CFM3B CRM family member 3B 0.03 Archaeplastida
AT4G29750 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 Archaeplastida
AT5G16180 ATCRS1, CRS1 ortholog of maize chloroplast splicing factor CRS1 0.03 Archaeplastida
GSVIVT01008296001 No alias CRM-domain containing factor CFM3,... 0.05 Archaeplastida
GSVIVT01018109001 No alias RNA processing.organelle machineries.RNA... 0.07 Archaeplastida
GSVIVT01031001001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01032542001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
LOC_Os04g39060.2 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
LOC_Os05g47850.1 No alias CRM-domain containing factor CFM3,... 0.05 Archaeplastida
LOC_Os09g19850.1 No alias CRM-domain containing factor CFM3,... 0.06 Archaeplastida
LOC_Os11g37990.1 No alias CFM3-type plastidial RNA splicing factor 0.03 Archaeplastida
MA_10432072g0010 No alias CFM2-type plastidial RNA splicing factor 0.05 Archaeplastida
MA_10435740g0010 No alias CFM2-type plastidial RNA splicing factor 0.05 Archaeplastida
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Pp3c13_17270V3.1 No alias CRM family member 2 0.06 Archaeplastida
Smo120007 No alias CRM-domain containing factor CFM3,... 0.02 Archaeplastida
Solyc03g119450.3.1 No alias CRM-domain containing factor CFM3,... 0.06 Archaeplastida
Solyc07g039500.4.1 No alias CRM-domain containing factor CFM3,... 0.06 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.06 Archaeplastida
Zm00001e032339_P002 No alias CRM-domain containing factor CFM3,... 0.08 Archaeplastida
Zm00001e033939_P001 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004820 glycine-tRNA ligase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006426 glycyl-tRNA aminoacylation IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 177 242
No external refs found!