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  5. Gb_18302

Gb_18302


Description : CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana (sp|q8l7c2|cfm2_arath : 214.0)


Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0015078 (LandPlants) Phylogenetic Tree(s): OG_05_0015078_tree ,
OG_06_0019048 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18302
Cluster HCCA: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00114550 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00079p00107040 evm_27.TU.AmTr_v1... CRM-domain containing factor CFM3,... 0.02 Archaeplastida
AT3G01370 ATCFM2, CFM2 CRM family member 2 0.06 Archaeplastida
AT3G18390 EMB1865 CRS1 / YhbY (CRM) domain-containing protein 0.04 Archaeplastida
AT3G23070 ATCFM3A, CFM3A CRM family member 3A 0.08 Archaeplastida
AT4G14510 ATCFM3B, CFM3B CRM family member 3B 0.04 Archaeplastida
GSVIVT01008296001 No alias CRM-domain containing factor CFM3,... 0.02 Archaeplastida
GSVIVT01018109001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01032542001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
LOC_Os04g39060.2 No alias CRM-domain containing factor CFM2, chloroplastic... 0.03 Archaeplastida
LOC_Os05g47850.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
LOC_Os09g19850.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
MA_10432072g0010 No alias CFM2-type plastidial RNA splicing factor 0.03 Archaeplastida
MA_10435740g0010 No alias CFM2-type plastidial RNA splicing factor 0.02 Archaeplastida
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.04 Archaeplastida
Pp3c13_17270V3.1 No alias CRM family member 2 0.05 Archaeplastida
Solyc03g119450.3.1 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Solyc07g039500.4.1 No alias CRM-domain containing factor CFM3,... 0.03 Archaeplastida
Solyc09g083350.3.1 No alias CFM3-type plastidial RNA splicing factor 0.04 Archaeplastida
Zm00001e032339_P002 No alias CRM-domain containing factor CFM3,... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 109 175
No external refs found!