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  5. Gb_18359

Gb_18359


Description : Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana (sp|q9ltv8|pp224_arath : 648.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18359
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00110050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00029p00062420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g20730... 0.02 Archaeplastida
AMTR_s00137p00065490 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AT1G68930 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Archaeplastida
AT4G14850 LOI1, MEF11 Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G27110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
GSVIVT01027504001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Gb_00199 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_00259 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
Gb_00601 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_00683 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
Gb_00852 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_00862 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_01327 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_01366 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_02037 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_02038 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_02229 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_03263 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_03345 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_03691 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 Archaeplastida
Gb_04091 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_04144 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.08 Archaeplastida
Gb_04167 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_04419 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_04428 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_04886 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_05259 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida
Gb_05264 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.12 Archaeplastida
Gb_06185 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_07638 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.06 Archaeplastida
Gb_09741 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_10113 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.05 Archaeplastida
Gb_11545 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_11664 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.1 Archaeplastida
Gb_12556 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
Gb_13405 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_14324 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_14459 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_16448 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
Gb_17065 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
Gb_17092 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_17321 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_18979 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.11 Archaeplastida
Gb_20456 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.11 Archaeplastida
Gb_21237 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_21270 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_21441 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_21580 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_21949 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_22477 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.12 Archaeplastida
Gb_22613 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
Gb_23023 No alias RNA editing factor (OTP82) 0.08 Archaeplastida
Gb_23088 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_23320 No alias RNA editing factor (OTP82) 0.11 Archaeplastida
Gb_25046 No alias Putative pentatricopeptide repeat-containing protein... 0.12 Archaeplastida
Gb_25129 No alias RNA editing factor (ECD1) 0.05 Archaeplastida
Gb_25130 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
Gb_26154 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
Gb_26260 No alias RNA editing factor (MEF7) 0.07 Archaeplastida
Gb_26526 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 Archaeplastida
Gb_26581 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_26694 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_26816 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.11 Archaeplastida
Gb_26861 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_27381 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_27462 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.08 Archaeplastida
Gb_27879 No alias RNA editing factor (ECB2/VAC1) 0.06 Archaeplastida
Gb_27880 No alias RNA editing factor (ECB2/VAC1) 0.04 Archaeplastida
Gb_28582 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_28770 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
Gb_29543 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_29874 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
Gb_29995 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_30097 No alias RNA editing factor (CRR21) 0.04 Archaeplastida
Gb_30523 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
Gb_31266 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_31498 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
Gb_31702 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_32450 No alias RNA editing factor (CRR21) 0.07 Archaeplastida
Gb_32989 No alias Pentatricopeptide repeat-containing protein At3g49710... 0.06 Archaeplastida
Gb_33064 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_33718 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_33959 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_35886 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_36168 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_37254 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
Gb_37516 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_37554 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_38068 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_38129 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_39406 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_40381 No alias Putative pentatricopeptide repeat-containing protein... 0.11 Archaeplastida
Gb_41233 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_41341 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
MA_101084g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.08 Archaeplastida
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
MA_10426261g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.08 Archaeplastida
MA_10429540g0010 No alias Pentatricopeptide repeat-containing protein At4g14850... 0.05 Archaeplastida
MA_10429837g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
MA_10430355g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_10432670g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.11 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_112594g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
MA_11454g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_116829g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_121267g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
MA_122899g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_124868g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.1 Archaeplastida
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_136188g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_140208g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_140591g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_141731g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_16226g0010 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.06 Archaeplastida
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
MA_174226g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_177230g0010 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
MA_20599g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
MA_20899g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_24849g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_25515g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_27147g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
MA_27726g0010 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
MA_28390g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_285318g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_2991g0010 No alias RNA editing factor (MEF12) 0.06 Archaeplastida
MA_305950g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_30949g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_322292g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
MA_32723g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_33151g0010 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.08 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
MA_36643g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_412g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_442926g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 Archaeplastida
MA_4503g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
MA_46875g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
MA_470025g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_49545g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_501007g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_502206g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_511569g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
MA_519985g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.11 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_55967g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.05 Archaeplastida
MA_60579g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
MA_62181g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.07 Archaeplastida
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
MA_656915g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
MA_68707g0010 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
MA_68933g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_70677g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_73205g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_75133g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_794605g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_81105g0010 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
MA_8319g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_84538g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_8607116g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 Archaeplastida
MA_86739g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
MA_8678g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_87646g0010 No alias RNA editing factor (MEF13) 0.04 Archaeplastida
MA_9415113g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_953240g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_95507g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
MA_96662g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 604 728
IPR002885 Pentatricopeptide_repeat 505 530
IPR002885 Pentatricopeptide_repeat 232 279
IPR002885 Pentatricopeptide_repeat 131 178
IPR002885 Pentatricopeptide_repeat 333 379
IPR002885 Pentatricopeptide_repeat 430 478
No external refs found!