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  5. Gb_18745

Gb_18745


Description : Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana (sp|q9stf3|pp265_arath : 591.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18745
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00235510 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
AMTR_s00032p00029450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT2G02750 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT2G33760 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G40410 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01008721001 No alias Pentatricopeptide repeat-containing protein At5g40410,... 0.03 Archaeplastida
GSVIVT01016874001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
Gb_00601 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_00852 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_01327 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_03263 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
Gb_04419 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_04428 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_06523 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
Gb_06560 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Archaeplastida
Gb_09797 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
Gb_11667 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
Gb_13190 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_13405 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_17382 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
Gb_18166 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_21049 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
Gb_21270 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_21949 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_22740 No alias Pentatricopeptide repeat-containing protein At1g15510,... 0.04 Archaeplastida
Gb_23320 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_25129 No alias RNA editing factor (ECD1) 0.04 Archaeplastida
Gb_26694 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
Gb_27462 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Gb_29543 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_29872 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_30097 No alias RNA editing factor (CRR21) 0.05 Archaeplastida
Gb_31498 No alias RNA editing factor (MEF19) 0.07 Archaeplastida
Gb_32453 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_35886 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_37254 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.07 Archaeplastida
Gb_41801 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
LOC_Os01g60430.1 No alias RNA editing factor (MEF10) 0.03 Archaeplastida
LOC_Os01g62910.1 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
LOC_Os03g04390.1 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.04 Archaeplastida
LOC_Os04g57940.1 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
LOC_Os06g12510.1 No alias Pentatricopeptide repeat-containing protein At5g15300... 0.03 Archaeplastida
LOC_Os11g10740.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
LOC_Os12g06070.1 No alias Pentatricopeptide repeat-containing protein At5g04780,... 0.02 Archaeplastida
MA_101084g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_103698g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_10427342g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.05 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_10430171g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.06 Archaeplastida
MA_106123g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_112594g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.03 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_121267g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_124868g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_131437g0010 No alias RNA editing factor (MEF3) 0.08 Archaeplastida
MA_136188g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
MA_136326g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_140208g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_140591g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_174226g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_175688g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_177230g0010 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
MA_183278g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
MA_185098g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
MA_19816g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_20599g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
MA_20746g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_22485g0010 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_27147g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
MA_285318g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_305950g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_322292g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_32723g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_3317g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_392600g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Archaeplastida
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_39801g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_412g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_445076g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_46875g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Archaeplastida
MA_470025g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
MA_472579g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_49545g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_50118g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.06 Archaeplastida
MA_57048g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.03 Archaeplastida
MA_60579g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_65500g0010 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.03 Archaeplastida
MA_656915g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_68707g0010 No alias RNA editing factor (MEF1) 0.03 Archaeplastida
MA_68933g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_75255g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_7691g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_778985g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_81105g0010 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
MA_812716g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_81436g0010 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Archaeplastida
MA_8319g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_83898g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_8607116g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_90090g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.07 Archaeplastida
Pp3c4_16600V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Smo110409 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
Smo116755 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.04 Archaeplastida
Smo134463 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Smo428483 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Solyc02g065030.1.1 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Solyc02g070710.3.1 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.04 Archaeplastida
Solyc02g080350.1.1 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.03 Archaeplastida
Solyc02g087610.1.1 No alias Pentatricopeptide repeat-containing protein At3g28660... 0.04 Archaeplastida
Solyc02g088470.1.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.04 Archaeplastida
Solyc03g007840.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc03g116000.1.1 No alias Pentatricopeptide repeat-containing protein At3g47530... 0.04 Archaeplastida
Solyc03g119950.1.1 No alias RNA editing factor (ECB2/VAC1) 0.04 Archaeplastida
Solyc08g014100.1.1 No alias Pentatricopeptide repeat-containing protein At5g43790... 0.04 Archaeplastida
Solyc10g080220.2.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc11g071370.1.1 No alias RNA editing factor (CLB19) 0.03 Archaeplastida
Zm00001e000301_P001 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.04 Archaeplastida
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 Archaeplastida
Zm00001e006544_P001 No alias No annotation 0.03 Archaeplastida
Zm00001e010837_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.08 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.03 Archaeplastida
Zm00001e015358_P001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.03 Archaeplastida
Zm00001e015727_P001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 Archaeplastida
Zm00001e018565_P001 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.03 Archaeplastida
Zm00001e021453_P001 No alias Pentatricopeptide repeat-containing protein At5g06540... 0.03 Archaeplastida
Zm00001e022858_P001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Zm00001e029119_P001 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.03 Archaeplastida
Zm00001e030831_P001 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.04 Archaeplastida
Zm00001e030887_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e031351_P001 No alias RNA editing factor (ECD1) 0.04 Archaeplastida
Zm00001e035654_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.05 Archaeplastida
Zm00001e036647_P001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.03 Archaeplastida
Zm00001e037600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e038629_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e040418_P001 No alias Pentatricopeptide repeat-containing protein At3g05340... 0.03 Archaeplastida
Zm00001e041082_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 277 303
IPR002885 Pentatricopeptide_repeat 451 474
IPR002885 Pentatricopeptide_repeat 84 105
IPR002885 Pentatricopeptide_repeat 249 275
IPR002885 Pentatricopeptide_repeat 350 371
IPR002885 Pentatricopeptide_repeat 174 221
IPR002885 Pentatricopeptide_repeat 376 422
IPR032867 DYW_dom 549 673
No external refs found!