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  5. Gb_18840

Gb_18840


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 638.0)


Gene families : OG0005512 (Archaeplastida) Phylogenetic Tree(s): OG0005512_tree ,
OG_05_0057923 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0050958 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18840
Cluster HCCA: Cluster_311

Target Alias Description ECC score Gene Family Method Actions
MA_11517g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_175700g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
MA_8741g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.07 Archaeplastida
Smo104027 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.04 Archaeplastida
Smo10568 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.12 Archaeplastida
Smo109820 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.08 Archaeplastida
Smo112158 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
Smo125156 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.08 Archaeplastida
Smo131822 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.02 Archaeplastida
Smo16655 No alias Pentatricopeptide repeat-containing protein At1g06140,... 0.03 Archaeplastida
Smo33144 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo72055 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Smo81428 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.05 Archaeplastida
Smo88015 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Smo89100 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Smo90409 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 226 254
IPR002885 Pentatricopeptide_repeat 132 162
IPR002885 Pentatricopeptide_repeat 291 319
IPR002885 Pentatricopeptide_repeat 167 197
IPR002885 Pentatricopeptide_repeat 75 100
IPR002885 Pentatricopeptide_repeat 496 520
IPR002885 Pentatricopeptide_repeat 320 366
IPR002885 Pentatricopeptide_repeat 421 467
IPR002885 Pentatricopeptide_repeat 258 290
IPR032867 DYW_dom 594 655
No external refs found!