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  5. Gb_18914

Gb_18914


Description : Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana (sp|q7y211|pp285_arath : 590.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_18914
Cluster HCCA: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
AT2G33680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT2G39620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G12770 MEF22 mitochondrial editing factor 22 0.03 Archaeplastida
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G33990 EMB2758 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01000420001 No alias RNA processing.organelle machineries.RNA... 0.05 Archaeplastida
GSVIVT01004939001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01007974001 No alias Pentatricopeptide repeat-containing protein At5g61400... 0.04 Archaeplastida
GSVIVT01008537001 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.04 Archaeplastida
GSVIVT01017989001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01024870001 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.04 Archaeplastida
GSVIVT01030443001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.05 Archaeplastida
Gb_00601 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_00852 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_03263 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
Gb_03691 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.05 Archaeplastida
Gb_04419 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_04428 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_04450 No alias OTP70 plastidial RNA splicing factor 0.06 Archaeplastida
Gb_04533 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_06693 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_08029 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_08862 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.06 Archaeplastida
Gb_09792 No alias RNA editing factor (MEF7) 0.06 Archaeplastida
Gb_13405 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 Archaeplastida
Gb_17294 No alias RNA editing factor (MEF3) 0.07 Archaeplastida
Gb_17295 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
Gb_17382 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.07 Archaeplastida
Gb_17620 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_18979 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_20504 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_21055 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
Gb_21237 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Gb_21270 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
Gb_21949 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_22740 No alias Pentatricopeptide repeat-containing protein At1g15510,... 0.06 Archaeplastida
Gb_22805 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_23320 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_24515 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_25581 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
Gb_26694 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
Gb_26816 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
Gb_27462 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
Gb_28762 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_29543 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_29872 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_29995 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.06 Archaeplastida
Gb_30146 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
Gb_30661 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_30991 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_31498 No alias RNA editing factor (MEF19) 0.07 Archaeplastida
Gb_31546 No alias RNA editing factor (MEF3) 0.07 Archaeplastida
Gb_32452 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.07 Archaeplastida
Gb_35108 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.08 Archaeplastida
Gb_35645 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.05 Archaeplastida
Gb_35886 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_36398 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
Gb_36636 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
Gb_37554 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
Gb_38232 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_38441 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
Gb_39702 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_40381 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Gb_41341 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
LOC_Os03g42650.2 No alias Pentatricopeptide repeat-containing protein At5g66500,... 0.03 Archaeplastida
LOC_Os03g63260.3 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
LOC_Os04g53630.1 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.03 Archaeplastida
LOC_Os08g25280.1 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.04 Archaeplastida
MA_101084g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_10248752g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_103698g0030 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
MA_10426261g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_10429069g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.04 Archaeplastida
MA_10432670g0020 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_10433543g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.05 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_109134g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_110g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_115669g0020 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.1 Archaeplastida
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_122899g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
MA_124868g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_131437g0010 No alias RNA editing factor (MEF3) 0.03 Archaeplastida
MA_131g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_136188g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_141034g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_174226g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
MA_18383g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
MA_185098g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.07 Archaeplastida
MA_187514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_19715g0020 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
MA_20599g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.06 Archaeplastida
MA_215359g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_25515g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.07 Archaeplastida
MA_27147g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.03 Archaeplastida
MA_27726g0010 No alias RNA editing factor (ECB2/VAC1) 0.05 Archaeplastida
MA_28390g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_285318g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.06 Archaeplastida
MA_291996g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.1 Archaeplastida
MA_305950g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_33151g0010 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.05 Archaeplastida
MA_3317g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_3471g0010 No alias RNA editing factor (MEF19) 0.07 Archaeplastida
MA_3502g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
MA_38266g0010 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.04 Archaeplastida
MA_43727g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_440697g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_46875g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
MA_472579g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_50118g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_502206g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.11 Archaeplastida
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.06 Archaeplastida
MA_511569g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.11 Archaeplastida
MA_5481g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_55967g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.04 Archaeplastida
MA_60579g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
MA_62181g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_63139g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 Archaeplastida
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_66417g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
MA_73895g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
MA_742g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_77437g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_77675g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_794605g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_81105g0010 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
MA_8319g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.07 Archaeplastida
MA_84538g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_87646g0010 No alias RNA editing factor (MEF13) 0.04 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_89214g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_90090g0010 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.06 Archaeplastida
MA_9354530g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.08 Archaeplastida
MA_9384g0020 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.05 Archaeplastida
MA_944980g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.09 Archaeplastida
MA_96662g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
MA_98224g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo34426 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.04 Archaeplastida
Smo79457 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Solyc02g079260.2.1 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Zm00001e003284_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e005246_P001 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.05 Archaeplastida
Zm00001e011748_P001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 Archaeplastida
Zm00001e015727_P001 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.03 Archaeplastida
Zm00001e016923_P001 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Zm00001e030887_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 137 183
IPR002885 Pentatricopeptide_repeat 237 273
IPR002885 Pentatricopeptide_repeat 374 421
IPR002885 Pentatricopeptide_repeat 449 472
IPR002885 Pentatricopeptide_repeat 47 68
IPR002885 Pentatricopeptide_repeat 275 305
IPR032867 DYW_dom 547 671
No external refs found!