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  5. Gb_19230

Gb_19230


Description : transcription factor (HD-ZIP IV)


Gene families : OG0000182 (Archaeplastida) Phylogenetic Tree(s): OG0000182_tree ,
OG_05_0000064 (LandPlants) Phylogenetic Tree(s): OG_05_0000064_tree ,
OG_06_0001940 (SeedPlants) Phylogenetic Tree(s): OG_06_0001940_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_19230
Cluster HCCA: Cluster_311

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01017073001 No alias RNA biosynthesis.transcriptional activation.HB... 0.07 Archaeplastida
Gb_05082 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
MA_305431g0010 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida
Solyc01g091630.3.1 No alias transcription factor (HD-ZIP IV) 0.04 Archaeplastida
Zm00001e017088_P001 No alias transcription factor (HD-ZIP IV) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0008289 lipid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002913 START_lipid-bd_dom 384 607
IPR001356 Homeobox_dom 187 242
No external refs found!