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  5. Gb_19425

Gb_19425


Description : phosphopentose epimerase


Gene families : OG0004410 (Archaeplastida) Phylogenetic Tree(s): OG0004410_tree ,
OG_05_0005832 (LandPlants) Phylogenetic Tree(s): OG_05_0005832_tree ,
OG_06_0006641 (SeedPlants) Phylogenetic Tree(s): OG_06_0006641_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_19425
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00063510 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.phosphopentose epimerase 0.07 Archaeplastida
AT5G61410 RPE, EMB2728 D-ribulose-5-phosphate-3-epimerase 0.02 Archaeplastida
Cpa|evm.model.tig00020564.39 No alias Ribulose-phosphate 3-epimerase, chloroplastic... 0.03 Archaeplastida
Cre12.g511900 No alias Photosynthesis.calvin cycle.phosphopentose epimerase 0.02 Archaeplastida
GSVIVT01007976001 No alias Photosynthesis.calvin cycle.phosphopentose epimerase 0.12 Archaeplastida
LOC_Os03g07300.1 No alias phosphopentose epimerase 0.06 Archaeplastida
MA_92814g0010 No alias phosphopentose epimerase 0.08 Archaeplastida
Mp6g10960.1 No alias phosphopentose epimerase 0.11 Archaeplastida
Pp3c11_3710V3.1 No alias D-ribulose-5-phosphate-3-epimerase 0.08 Archaeplastida
Smo228435 No alias Photosynthesis.calvin cycle.phosphopentose epimerase 0.11 Archaeplastida
Solyc03g115820.3.1 No alias phosphopentose epimerase 0.08 Archaeplastida
Zm00001e000521_P003 No alias phosphopentose epimerase 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009512 cytochrome b6f complex IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
MF GO:0010181 FMN binding IEP Neighborhood
BP GO:0010207 photosystem II assembly IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0019829 cation-transporting ATPase activity IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022853 active ion transmembrane transporter activity IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042625 ATPase coupled ion transmembrane transporter activity IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Neighborhood
MF GO:0046422 violaxanthin de-epoxidase activity IEP Neighborhood
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Neighborhood
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
CC GO:0070069 cytochrome complex IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
MF GO:0098809 nitrite reductase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000056 Ribul_P_3_epim-like 73 271
No external refs found!