Gb_20056


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 292.0)


Gene families : OG0000364 (Archaeplastida) Phylogenetic Tree(s): OG0000364_tree ,
OG_05_0000134 (LandPlants) Phylogenetic Tree(s): OG_05_0000134_tree ,
OG_06_0000108 (SeedPlants) Phylogenetic Tree(s): OG_06_0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20056
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Gb_00288 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_01729 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 Archaeplastida
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_10464 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_13320 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_21518 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_22414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 Archaeplastida
Gb_24597 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 Archaeplastida
Gb_25092 No alias no hits & (original description: none) 0.33 Archaeplastida
Gb_25323 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_26718 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_26878 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_27233 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_27666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.08 Archaeplastida
Gb_38048 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.07 Archaeplastida
Gb_39221 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 Archaeplastida
Gb_40566 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_40853 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 123 237
IPR025724 GAG-pre-integrase_dom 55 109
No external refs found!