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  5. Gb_20239

Gb_20239


Description : Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana (sp|q9fnd8|pp409_arath : 394.0)


Gene families : OG0000731 (Archaeplastida) Phylogenetic Tree(s): OG0000731_tree ,
OG_05_0000430 (LandPlants) Phylogenetic Tree(s): OG_05_0000430_tree ,
OG_06_0000220 (SeedPlants) Phylogenetic Tree(s): OG_06_0000220_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20239
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00203030 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.03 Archaeplastida
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.05 Archaeplastida
AMTR_s00080p00074320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g26680,... 0.03 Archaeplastida
AT1G11710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT1G19290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
AT2G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.14 Archaeplastida
AT5G01110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 Archaeplastida
AT5G40400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Archaeplastida
AT5G55840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT5G59900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
GSVIVT01008360001 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.09 Archaeplastida
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01010244001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01031896001 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.03 Archaeplastida
Gb_03188 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 Archaeplastida
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_29383 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_30066 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.03 Archaeplastida
LOC_Os03g06910.1 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.02 Archaeplastida
LOC_Os03g40690.1 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.06 Archaeplastida
LOC_Os05g19390.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os12g21930.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.03 Archaeplastida
MA_111225g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_139384g0010 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.04 Archaeplastida
MA_278706g0010 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 Archaeplastida
MA_302333g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.06 Archaeplastida
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.13 Archaeplastida
MA_6175g0010 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.1 Archaeplastida
MA_64750g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_774352g0010 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.05 Archaeplastida
Solyc02g021270.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Solyc07g047620.3.1 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.05 Archaeplastida
Solyc10g051010.3.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.04 Archaeplastida
Solyc11g073270.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Zm00001e000493_P001 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.03 Archaeplastida
Zm00001e035584_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 544 592
IPR002885 Pentatricopeptide_repeat 194 243
IPR002885 Pentatricopeptide_repeat 299 348
IPR002885 Pentatricopeptide_repeat 439 488
IPR002885 Pentatricopeptide_repeat 369 418
IPR002885 Pentatricopeptide_repeat 162 189
IPR002885 Pentatricopeptide_repeat 506 537
IPR002885 Pentatricopeptide_repeat 261 292
No external refs found!