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  5. Gb_20313

Gb_20313


Description : Alpha-amylase 3, chloroplastic OS=Arabidopsis thaliana (sp|q94a41|amy3_arath : 103.0)


Gene families : OG0002569 (Archaeplastida) Phylogenetic Tree(s): OG0002569_tree ,
OG_05_0002364 (LandPlants) Phylogenetic Tree(s): OG_05_0002364_tree ,
OG_06_0001746 (SeedPlants) Phylogenetic Tree(s): OG_06_0001746_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20313
Cluster HCCA: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00076p00097050 evm_27.TU.AmTr_v1... Replication factor C subunit 1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT1G04730 CTF18 P-loop containing nucleoside triphosphate hydrolases... 0.02 Archaeplastida
Cpa|evm.model.tig00001333.30 No alias No description available 0.01 Archaeplastida
LOC_Os03g15810.1 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007034 vacuolar transport IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!