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  5. Gb_20456

Gb_20456


Description : Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana (sp|q9liq7|pp252_arath : 522.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0014317 (LandPlants) Phylogenetic Tree(s): OG_05_0014317_tree ,
OG_06_0014252 (SeedPlants) Phylogenetic Tree(s): OG_06_0014252_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20456
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00110050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00029p00062420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g20730... 0.04 Archaeplastida
AMTR_s00032p00177680 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00099p00036710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71490... 0.02 Archaeplastida
AMTR_s00137p00065490 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
GSVIVT01005196001 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
GSVIVT01007645001 No alias Pentatricopeptide repeat-containing protein ELI1,... 0.03 Archaeplastida
GSVIVT01008015001 No alias Pentatricopeptide repeat-containing protein At1g74600,... 0.04 Archaeplastida
GSVIVT01021023001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01027196001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.03 Archaeplastida
GSVIVT01027504001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.06 Archaeplastida
GSVIVT01027839001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01036010001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_00194 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_01366 No alias Putative pentatricopeptide repeat-containing protein... 0.08 Archaeplastida
Gb_02031 No alias RNA editing factor (MEF19) 0.06 Archaeplastida
Gb_02998 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.08 Archaeplastida
Gb_03137 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_04420 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
Gb_04446 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 Archaeplastida
Gb_04616 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_04886 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
Gb_05939 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_06115 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.08 Archaeplastida
Gb_06185 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.06 Archaeplastida
Gb_07617 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.06 Archaeplastida
Gb_09410 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_09797 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.07 Archaeplastida
Gb_10151 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_10908 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Gb_11523 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_11925 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 Archaeplastida
Gb_14392 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.08 Archaeplastida
Gb_16017 No alias RNA editing factor (MEF19) 0.07 Archaeplastida
Gb_16848 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_16955 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
Gb_17379 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_18359 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.11 Archaeplastida
Gb_18908 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.06 Archaeplastida
Gb_19299 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_20504 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 Archaeplastida
Gb_20837 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.07 Archaeplastida
Gb_21056 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_21442 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_23089 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.05 Archaeplastida
Gb_23671 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.08 Archaeplastida
Gb_23934 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 Archaeplastida
Gb_25271 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
Gb_25604 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_26158 No alias RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_26311 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Gb_26696 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_27176 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_27437 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_28038 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.07 Archaeplastida
Gb_29877 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_31702 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_32051 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_32448 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 Archaeplastida
Gb_32528 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.08 Archaeplastida
Gb_33061 No alias RNA editing factor (MEF3) 0.08 Archaeplastida
Gb_34297 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_34736 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_35395 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_35396 No alias Pentatricopeptide repeat-containing protein At4g39530... 0.05 Archaeplastida
Gb_36434 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.11 Archaeplastida
Gb_38129 No alias RNA editing factor (OTP82) 0.06 Archaeplastida
Gb_38417 No alias OTP70 plastidial RNA splicing factor 0.05 Archaeplastida
Gb_39300 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
Gb_39440 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.07 Archaeplastida
Gb_39514 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.14 Archaeplastida
Gb_40434 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.06 Archaeplastida
MA_101084g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
MA_10429371g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.08 Archaeplastida
MA_10429540g0010 No alias Pentatricopeptide repeat-containing protein At4g14850... 0.05 Archaeplastida
MA_10429837g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_10433543g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_10436764g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.08 Archaeplastida
MA_104937g0010 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.05 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_112066g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_11454g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
MA_114565g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.03 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_117650g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_121267g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_122899g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
MA_124868g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_13057g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.11 Archaeplastida
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_131437g0010 No alias RNA editing factor (MEF3) 0.03 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
MA_140208g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_14381g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_16226g0010 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.04 Archaeplastida
MA_16917g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_174226g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_185098g0010 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.06 Archaeplastida
MA_193080g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_20599g0020 No alias Pentatricopeptide repeat-containing protein At5g16860... 0.04 Archaeplastida
MA_20899g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.06 Archaeplastida
MA_230261g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.09 Archaeplastida
MA_25515g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_27726g0010 No alias RNA editing factor (ECB2/VAC1) 0.05 Archaeplastida
MA_28390g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_285318g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_32723g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_33151g0010 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.09 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_3502g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.1 Archaeplastida
MA_36643g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.05 Archaeplastida
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.04 Archaeplastida
MA_41676g0020 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
MA_43727g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_442926g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.11 Archaeplastida
MA_4503g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.07 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_501007g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.09 Archaeplastida
MA_50118g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
MA_502206g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 Archaeplastida
MA_511569g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.03 Archaeplastida
MA_519985g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.08 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.1 Archaeplastida
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.05 Archaeplastida
MA_61422g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_62181g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.05 Archaeplastida
MA_632994g0010 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.05 Archaeplastida
MA_6527g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_656915g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
MA_66417g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_68933g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.04 Archaeplastida
MA_70677g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_73205g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
MA_75133g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.07 Archaeplastida
MA_812716g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
MA_83662g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.07 Archaeplastida
MA_84538g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
MA_8607116g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
MA_86739g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_87646g0010 No alias RNA editing factor (MEF13) 0.03 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_921g0010 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.07 Archaeplastida
MA_9258g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
MA_9384g0020 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.1 Archaeplastida
MA_953240g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.07 Archaeplastida
MA_961981g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.04 Archaeplastida
MA_96662g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.08 Archaeplastida
MA_98224g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo118039 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Smo118817 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.03 Archaeplastida
Smo121365 No alias Pentatricopeptide repeat-containing protein At3g02330,... 0.03 Archaeplastida
Smo125997 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Smo133872 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida
Smo27025 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
Smo410093 No alias No description available 0.03 Archaeplastida
Smo42377 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.03 Archaeplastida
Smo70138 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Smo72231 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
Smo74749 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
Smo77659 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Smo79457 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
Smo80412 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Smo80739 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Smo84768 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 475 599
IPR002885 Pentatricopeptide_repeat 376 400
IPR002885 Pentatricopeptide_repeat 442 470
IPR002885 Pentatricopeptide_repeat 145 193
IPR002885 Pentatricopeptide_repeat 302 348
IPR002885 Pentatricopeptide_repeat 54 93
No external refs found!