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Gb_20550


Description : siRNA-binding factor (AGO2) of non-canonical RdDM pathway


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0002747 (LandPlants) Phylogenetic Tree(s): OG_05_0002747_tree ,
OG_06_0002302 (SeedPlants) Phylogenetic Tree(s): OG_06_0002302_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20550
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00265690 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
MA_10122566g0010 No alias Protein argonaute 10 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_123150g0010 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.02 Archaeplastida
MA_159389g0010 No alias Protein argonaute 7 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_246308g0010 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_85246g0010 No alias Protein argonaute 4A OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Smo446086 No alias Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
Zm00001e006941_P001 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.02 Archaeplastida
Zm00001e010349_P002 No alias Protein argonaute 18 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e016179_P001 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0009143 nucleoside triphosphate catabolic process IEP Neighborhood
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR003165 Piwi 191 494
IPR032472 ArgoL2 36 81
No external refs found!