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  5. Gb_20571

Gb_20571


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 515.0)


Gene families : OG0003733 (Archaeplastida) Phylogenetic Tree(s): OG0003733_tree ,
OG_05_0056789 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0049730 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20571
Cluster HCCA: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00268520 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g23020... 0.02 Archaeplastida
AMTR_s00003p00261700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73710... 0.07 Archaeplastida
AT1G73710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
GSVIVT01018090001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.03 Archaeplastida
LOC_Os03g06710.1 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.05 Archaeplastida
LOC_Os07g28900.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.05 Archaeplastida
MA_102823g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.07 Archaeplastida
MA_10426616g0010 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 Archaeplastida
MA_118886g0010 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.05 Archaeplastida
MA_185599g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_547597g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc07g054480.3.1 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.05 Archaeplastida
Solyc09g083110.3.1 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.04 Archaeplastida
Zm00001e000477_P001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 457 498
IPR002885 Pentatricopeptide_repeat 399 446
IPR002885 Pentatricopeptide_repeat 500 548
IPR002885 Pentatricopeptide_repeat 236 282
IPR002885 Pentatricopeptide_repeat 135 182
IPR002885 Pentatricopeptide_repeat 339 366
IPR002885 Pentatricopeptide_repeat 574 598
IPR002885 Pentatricopeptide_repeat 210 232
IPR002885 Pentatricopeptide_repeat 311 337
No external refs found!