Coexpression cluster: Cluster_175 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0003674 molecular_function 46.43% (26/56) 1.14 2e-05 0.000606
GO:0101005 ubiquitinyl hydrolase activity 5.36% (3/56) 5.85 1.9e-05 0.000646
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity 5.36% (3/56) 5.85 1.9e-05 0.000646
GO:0019783 ubiquitin-like protein-specific protease activity 5.36% (3/56) 5.85 1.9e-05 0.000646
GO:0016579 protein deubiquitination 5.36% (3/56) 6.05 1.2e-05 0.000975
GO:0070646 protein modification by small protein removal 5.36% (3/56) 6.05 1.2e-05 0.000975
GO:0003676 nucleic acid binding 16.07% (9/56) 2.59 1.6e-05 0.000981
GO:0070647 protein modification by small protein conjugation or removal 5.36% (3/56) 5.46 4.3e-05 0.001139
GO:0003723 RNA binding 8.93% (5/56) 4.1 1.1e-05 0.00265
GO:0009889 regulation of biosynthetic process 7.14% (4/56) 3.54 0.000395 0.00393
GO:0031326 regulation of cellular biosynthetic process 7.14% (4/56) 3.54 0.000395 0.00393
GO:2000112 regulation of cellular macromolecule biosynthetic process 7.14% (4/56) 3.54 0.000395 0.00393
GO:0010556 regulation of macromolecule biosynthetic process 7.14% (4/56) 3.54 0.000395 0.00393
GO:0010468 regulation of gene expression 7.14% (4/56) 3.54 0.000395 0.00393
GO:0008150 biological_process 32.14% (18/56) 1.31 0.000167 0.003995
GO:0031323 regulation of cellular metabolic process 7.14% (4/56) 3.45 0.00049 0.004042
GO:0060255 regulation of macromolecule metabolic process 7.14% (4/56) 3.45 0.00049 0.004042
GO:0051171 regulation of nitrogen compound metabolic process 7.14% (4/56) 3.49 0.000446 0.0041
GO:0080090 regulation of primary metabolic process 7.14% (4/56) 3.49 0.000446 0.0041
GO:0043412 macromolecule modification 10.71% (6/56) 2.59 0.000472 0.004179
GO:0019222 regulation of metabolic process 7.14% (4/56) 3.41 0.00055 0.004384
GO:0019219 regulation of nucleobase-containing compound metabolic process 7.14% (4/56) 3.57 0.000366 0.004603
GO:0008234 cysteine-type peptidase activity 5.36% (3/56) 4.44 0.000362 0.004804
GO:0044428 nuclear part 5.36% (3/56) 4.46 0.000345 0.004844
GO:0006464 cellular protein modification process 10.71% (6/56) 2.68 0.000333 0.004978
GO:0036211 protein modification process 10.71% (6/56) 2.68 0.000333 0.004978
GO:0051252 regulation of RNA metabolic process 7.14% (4/56) 3.61 0.00033 0.005635
GO:2001141 regulation of RNA biosynthetic process 7.14% (4/56) 3.61 0.00033 0.005635
GO:0006355 regulation of transcription, DNA-templated 7.14% (4/56) 3.61 0.00033 0.005635
GO:1903506 regulation of nucleic acid-templated transcription 7.14% (4/56) 3.61 0.00033 0.005635
GO:0097159 organic cyclic compound binding 19.64% (11/56) 1.6 0.00081 0.006046
GO:1901363 heterocyclic compound binding 19.64% (11/56) 1.6 0.00081 0.006046
GO:0044267 cellular protein metabolic process 10.71% (6/56) 2.42 0.000883 0.006392
GO:0044237 cellular metabolic process 17.86% (10/56) 1.6 0.001425 0.010015
GO:0006376 mRNA splice site selection 1.79% (1/56) 8.78 0.002267 0.014258
GO:0006359 regulation of transcription by RNA polymerase III 1.79% (1/56) 8.78 0.002267 0.014258
GO:0016480 negative regulation of transcription by RNA polymerase III 1.79% (1/56) 8.78 0.002267 0.014258
GO:0005685 U1 snRNP 1.79% (1/56) 8.78 0.002267 0.014258
GO:0015672 monovalent inorganic cation transport 3.57% (2/56) 4.62 0.003027 0.018084
GO:0044238 primary metabolic process 17.86% (10/56) 1.46 0.002966 0.018179
GO:0140096 catalytic activity, acting on a protein 10.71% (6/56) 2.01 0.003635 0.021187
GO:0120114 Sm-like protein family complex 1.79% (1/56) 7.78 0.004529 0.022551
GO:0009678 hydrogen-translocating pyrophosphatase activity 1.79% (1/56) 7.78 0.004529 0.022551
GO:0097525 spliceosomal snRNP complex 1.79% (1/56) 7.78 0.004529 0.022551
GO:0030532 small nuclear ribonucleoprotein complex 1.79% (1/56) 7.78 0.004529 0.022551
GO:0071704 organic substance metabolic process 17.86% (10/56) 1.4 0.003994 0.02273
GO:1901564 organonitrogen compound metabolic process 12.5% (7/56) 1.74 0.004681 0.022833
GO:0019538 protein metabolic process 10.71% (6/56) 1.91 0.005011 0.023953
GO:0009987 cellular process 19.64% (11/56) 1.29 0.004523 0.024566
GO:0005488 binding 26.79% (15/56) 1.04 0.0045 0.025014
GO:0004664 prephenate dehydratase activity 1.79% (1/56) 7.2 0.006786 0.025743
GO:0071826 ribonucleoprotein complex subunit organization 1.79% (1/56) 7.2 0.006786 0.025743
GO:1902679 negative regulation of RNA biosynthetic process 1.79% (1/56) 7.2 0.006786 0.025743
GO:0070461 SAGA-type complex 1.79% (1/56) 7.2 0.006786 0.025743
GO:0022618 ribonucleoprotein complex assembly 1.79% (1/56) 7.2 0.006786 0.025743
GO:0005681 spliceosomal complex 1.79% (1/56) 7.2 0.006786 0.025743
GO:0009094 L-phenylalanine biosynthetic process 1.79% (1/56) 7.2 0.006786 0.025743
GO:0045892 negative regulation of transcription, DNA-templated 1.79% (1/56) 7.2 0.006786 0.025743
GO:1903507 negative regulation of nucleic acid-templated transcription 1.79% (1/56) 7.2 0.006786 0.025743
GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process 1.79% (1/56) 7.2 0.006786 0.025743
GO:0051253 negative regulation of RNA metabolic process 1.79% (1/56) 7.2 0.006786 0.025743
GO:0006807 nitrogen compound metabolic process 16.07% (9/56) 1.43 0.00564 0.026432
GO:0006558 L-phenylalanine metabolic process 1.79% (1/56) 6.78 0.009038 0.028053
GO:1902493 acetyltransferase complex 1.79% (1/56) 6.78 0.009038 0.028053
GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process 1.79% (1/56) 6.78 0.009038 0.028053
GO:0015269 calcium-activated potassium channel activity 1.79% (1/56) 6.78 0.009038 0.028053
GO:0031248 protein acetyltransferase complex 1.79% (1/56) 6.78 0.009038 0.028053
GO:0016286 small conductance calcium-activated potassium channel activity 1.79% (1/56) 6.78 0.009038 0.028053
GO:0005267 potassium channel activity 1.79% (1/56) 6.78 0.009038 0.028053
GO:0000123 histone acetyltransferase complex 1.79% (1/56) 6.78 0.009038 0.028053
GO:0003729 mRNA binding 1.79% (1/56) 6.78 0.009038 0.028053
GO:0005227 calcium activated cation channel activity 1.79% (1/56) 6.78 0.009038 0.028053
GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway 1.79% (1/56) 6.78 0.009038 0.028053
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 1.79% (1/56) 6.78 0.009038 0.028053
GO:0004427 inorganic diphosphatase activity 1.79% (1/56) 6.78 0.009038 0.028053
GO:0008152 metabolic process 19.64% (11/56) 1.22 0.006253 0.02874
GO:0044260 cellular macromolecule metabolic process 10.71% (6/56) 1.71 0.009674 0.029642
GO:0003824 catalytic activity 21.43% (12/56) 1.09 0.008686 0.032438
GO:0005261 cation channel activity 1.79% (1/56) 6.46 0.011285 0.032495
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 1.79% (1/56) 6.46 0.011285 0.032495
GO:0009890 negative regulation of biosynthetic process 1.79% (1/56) 6.46 0.011285 0.032495
GO:0010558 negative regulation of macromolecule biosynthetic process 1.79% (1/56) 6.46 0.011285 0.032495
GO:0031327 negative regulation of cellular biosynthetic process 1.79% (1/56) 6.46 0.011285 0.032495
GO:0016853 isomerase activity 3.57% (2/56) 3.56 0.0126 0.035851
GO:0015079 potassium ion transmembrane transporter activity 1.79% (1/56) 6.2 0.013527 0.035921
GO:0000398 mRNA splicing, via spliceosome 1.79% (1/56) 6.2 0.013527 0.035921
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 1.79% (1/56) 6.2 0.013527 0.035921
GO:0000375 RNA splicing, via transesterification reactions 1.79% (1/56) 6.2 0.013527 0.035921
GO:0051172 negative regulation of nitrogen compound metabolic process 1.79% (1/56) 6.2 0.013527 0.035921
GO:0016787 hydrolase activity 10.71% (6/56) 1.6 0.014 0.036768
GO:0070011 peptidase activity, acting on L-amino acid peptides 5.36% (3/56) 2.61 0.013169 0.037029
GO:0006508 proteolysis 5.36% (3/56) 2.56 0.014503 0.037676
GO:0008233 peptidase activity 5.36% (3/56) 2.52 0.015374 0.039509
GO:0031324 negative regulation of cellular metabolic process 1.79% (1/56) 5.98 0.015763 0.04008
GO:0043170 macromolecule metabolic process 12.5% (7/56) 1.39 0.01644 0.040928
GO:0044446 intracellular organelle part 5.36% (3/56) 2.49 0.016274 0.040942
GO:0044422 organelle part 5.36% (3/56) 2.47 0.017015 0.041923
GO:0008408 3'-5' exonuclease activity 1.79% (1/56) 5.78 0.017996 0.043444
GO:0010629 negative regulation of gene expression 1.79% (1/56) 5.78 0.017996 0.043444
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_33 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_114 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_162 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_168 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_108 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_112 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_190 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_214 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_215 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_13 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_267 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_267 0.037 Archaeplastida Compare
Zea mays HCCA Cluster_301 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_322 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_329 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_32 0.027 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_61 0.029 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_142 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_111 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_267 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_513 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_530 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_139 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_348 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_111 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_118 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_185 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.027 Archaeplastida Compare
Vitis vinifera HCCA Cluster_180 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_196 0.033 Archaeplastida Compare
Vitis vinifera HCCA Cluster_217 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_62 0.019 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_95 0.024 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_163 0.019 Archaeplastida Compare
Sequences (56) (download table)

InterPro Domains

GO Terms

Family Terms