Coexpression cluster: Cluster_133 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0006082 organic acid metabolic process 6.98% (6/86) 3.67 8e-06 0.000574
GO:0043436 oxoacid metabolic process 6.98% (6/86) 3.7 7e-06 0.00079
GO:0034660 ncRNA metabolic process 5.81% (5/86) 3.92 2.1e-05 0.000906
GO:0006520 cellular amino acid metabolic process 5.81% (5/86) 3.95 1.9e-05 0.001022
GO:0019752 carboxylic acid metabolic process 6.98% (6/86) 3.73 6e-06 0.001386
GO:0016070 RNA metabolic process 6.98% (6/86) 2.88 0.000169 0.00621
GO:0016875 ligase activity, forming carbon-oxygen bonds 3.49% (3/86) 4.32 0.000455 0.007145
GO:0004812 aminoacyl-tRNA ligase activity 3.49% (3/86) 4.32 0.000455 0.007145
GO:0016874 ligase activity 4.65% (4/86) 3.6 0.000342 0.007534
GO:0043038 amino acid activation 3.49% (3/86) 4.36 0.000424 0.007773
GO:0043039 tRNA aminoacylation 3.49% (3/86) 4.36 0.000424 0.007773
GO:0009067 aspartate family amino acid biosynthetic process 2.33% (2/86) 6.36 0.000249 0.007818
GO:0006418 tRNA aminoacylation for protein translation 3.49% (3/86) 4.47 0.00034 0.008313
GO:0009066 aspartate family amino acid metabolic process 2.33% (2/86) 6.17 0.000331 0.0091
GO:0044281 small molecule metabolic process 6.98% (6/86) 2.38 0.001075 0.015762
GO:0140101 catalytic activity, acting on a tRNA 3.49% (3/86) 3.75 0.001456 0.016862
GO:0016053 organic acid biosynthetic process 3.49% (3/86) 3.75 0.001456 0.016862
GO:0046394 carboxylic acid biosynthetic process 3.49% (3/86) 3.75 0.001456 0.016862
GO:0140098 catalytic activity, acting on RNA 4.65% (4/86) 3.1 0.001246 0.017138
GO:0016180 snRNA processing 1.16% (1/86) 8.17 0.003481 0.02321
GO:0008172 S-methyltransferase activity 1.16% (1/86) 8.17 0.003481 0.02321
GO:0043628 ncRNA 3'-end processing 1.16% (1/86) 8.17 0.003481 0.02321
GO:0034472 snRNA 3'-end processing 1.16% (1/86) 8.17 0.003481 0.02321
GO:0008705 methionine synthase activity 1.16% (1/86) 8.17 0.003481 0.02321
GO:0004592 pantoate-beta-alanine ligase activity 1.16% (1/86) 8.17 0.003481 0.02321
GO:0036265 RNA (guanine-N7)-methylation 1.16% (1/86) 8.17 0.003481 0.02321
GO:0070475 rRNA base methylation 1.16% (1/86) 8.17 0.003481 0.02321
GO:0070476 rRNA (guanine-N7)-methylation 1.16% (1/86) 8.17 0.003481 0.02321
GO:0034477 U6 snRNA 3'-end processing 1.16% (1/86) 8.17 0.003481 0.02321
GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity 1.16% (1/86) 8.17 0.003481 0.02321
GO:0009086 methionine biosynthetic process 1.16% (1/86) 8.17 0.003481 0.02321
GO:0016073 snRNA metabolic process 1.16% (1/86) 8.17 0.003481 0.02321
GO:0006399 tRNA metabolic process 3.49% (3/86) 3.54 0.00221 0.024308
GO:0044283 small molecule biosynthetic process 3.49% (3/86) 3.18 0.004478 0.026624
GO:0009451 RNA modification 2.33% (2/86) 4.36 0.00427 0.026839
GO:1901607 alpha-amino acid biosynthetic process 2.33% (2/86) 4.36 0.00427 0.026839
GO:0044237 cellular metabolic process 13.95% (12/86) 1.25 0.004393 0.026844
GO:0071704 organic substance metabolic process 15.12% (13/86) 1.16 0.005053 0.029254
GO:0031167 rRNA methylation 1.16% (1/86) 7.17 0.006951 0.029985
GO:0000154 rRNA modification 1.16% (1/86) 7.17 0.006951 0.029985
GO:0036361 racemase activity, acting on amino acids and derivatives 1.16% (1/86) 7.17 0.006951 0.029985
GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives 1.16% (1/86) 7.17 0.006951 0.029985
GO:0015940 pantothenate biosynthetic process 1.16% (1/86) 7.17 0.006951 0.029985
GO:0015939 pantothenate metabolic process 1.16% (1/86) 7.17 0.006951 0.029985
GO:0008837 diaminopimelate epimerase activity 1.16% (1/86) 7.17 0.006951 0.029985
GO:0047661 amino-acid racemase activity 1.16% (1/86) 7.17 0.006951 0.029985
GO:0016435 rRNA (guanine) methyltransferase activity 1.16% (1/86) 7.17 0.006951 0.029985
GO:0006555 methionine metabolic process 1.16% (1/86) 7.17 0.006951 0.029985
GO:0090304 nucleic acid metabolic process 6.98% (6/86) 1.9 0.005474 0.030879
GO:1901605 alpha-amino acid metabolic process 2.33% (2/86) 4.08 0.006252 0.034386
GO:0008652 cellular amino acid biosynthetic process 2.33% (2/86) 4.04 0.006616 0.0355
GO:0140102 catalytic activity, acting on a rRNA 1.16% (1/86) 6.58 0.010409 0.038812
GO:0006553 lysine metabolic process 1.16% (1/86) 6.58 0.010409 0.038812
GO:0008649 rRNA methyltransferase activity 1.16% (1/86) 6.58 0.010409 0.038812
GO:0031123 RNA 3'-end processing 1.16% (1/86) 6.58 0.010409 0.038812
GO:0009085 lysine biosynthetic process 1.16% (1/86) 6.58 0.010409 0.038812
GO:0009089 lysine biosynthetic process via diaminopimelate 1.16% (1/86) 6.58 0.010409 0.038812
GO:0046451 diaminopimelate metabolic process 1.16% (1/86) 6.58 0.010409 0.038812
GO:0044238 primary metabolic process 13.95% (12/86) 1.1 0.009478 0.0401
GO:0008150 biological_process 22.09% (19/86) 0.76 0.013441 0.048477
GO:0006807 nitrogen compound metabolic process 12.79% (11/86) 1.1 0.013276 0.048677
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Amborella trichopoda HCCA Cluster_59 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_1 0.029 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_10 0.028 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_13 0.03 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_17 0.031 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_29 0.033 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_31 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_32 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_35 0.029 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_36 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_37 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_45 0.027 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_52 0.032 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_65 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_66 0.025 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_80 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_92 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_94 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_97 0.033 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_102 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_106 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_113 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_122 0.019 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_123 0.034 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_129 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_137 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_143 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_145 0.026 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_158 0.021 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_181 0.032 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_183 0.02 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_196 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_202 0.029 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_205 0.027 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_217 0.055 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_233 0.023 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_114 0.022 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_178 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_229 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_277 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_56 0.021 Archaeplastida Compare
Sequences (86) (download table)

InterPro Domains

GO Terms

Family Terms