Coexpression cluster: Cluster_53 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:1990904 ribonucleoprotein complex 72.0% (36/50) 5.32 0.0 0.0
GO:0003735 structural constituent of ribosome 62.0% (31/50) 5.58 0.0 0.0
GO:0044445 cytosolic part 60.0% (30/50) 5.72 0.0 0.0
GO:0005198 structural molecule activity 62.0% (31/50) 5.24 0.0 0.0
GO:0005840 ribosome 56.0% (28/50) 5.54 0.0 0.0
GO:0044391 ribosomal subunit 54.0% (27/50) 5.68 0.0 0.0
GO:0006412 translation 56.0% (28/50) 5.41 0.0 0.0
GO:0043043 peptide biosynthetic process 56.0% (28/50) 5.39 0.0 0.0
GO:0006518 peptide metabolic process 56.0% (28/50) 5.34 0.0 0.0
GO:0043228 non-membrane-bounded organelle 64.0% (32/50) 4.68 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 64.0% (32/50) 4.68 0.0 0.0
GO:0043604 amide biosynthetic process 56.0% (28/50) 5.25 0.0 0.0
GO:0043603 cellular amide metabolic process 56.0% (28/50) 4.9 0.0 0.0
GO:0032991 protein-containing complex 72.0% (36/50) 3.73 0.0 0.0
GO:0022625 cytosolic large ribosomal subunit 34.0% (17/50) 6.28 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 60.0% (30/50) 3.7 0.0 0.0
GO:0015934 large ribosomal subunit 34.0% (17/50) 5.88 0.0 0.0
GO:0009059 macromolecule biosynthetic process 60.0% (30/50) 3.51 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 56.0% (28/50) 3.46 0.0 0.0
GO:0022626 cytosolic ribosome 32.0% (16/50) 5.52 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 56.0% (28/50) 3.31 0.0 0.0
GO:0044267 cellular protein metabolic process 60.0% (30/50) 3.0 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 68.0% (34/50) 2.38 0.0 0.0
GO:0044446 intracellular organelle part 64.0% (32/50) 2.51 0.0 0.0
GO:0044422 organelle part 64.0% (32/50) 2.51 0.0 0.0
GO:0019538 protein metabolic process 60.0% (30/50) 2.58 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 60.0% (30/50) 2.37 0.0 0.0
GO:0044249 cellular biosynthetic process 62.0% (31/50) 2.24 0.0 0.0
GO:0043170 macromolecule metabolic process 68.0% (34/50) 2.0 0.0 0.0
GO:0022627 cytosolic small ribosomal subunit 20.0% (10/50) 5.73 0.0 0.0
GO:0044444 cytoplasmic part 88.0% (44/50) 1.34 0.0 0.0
GO:1901576 organic substance biosynthetic process 62.0% (31/50) 2.11 0.0 0.0
GO:0009058 biosynthetic process 62.0% (31/50) 2.07 0.0 0.0
GO:0015935 small ribosomal subunit 20.0% (10/50) 5.39 0.0 0.0
GO:0042254 ribosome biogenesis 18.0% (9/50) 5.57 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 60.0% (30/50) 2.0 0.0 0.0
GO:0022613 ribonucleoprotein complex biogenesis 18.0% (9/50) 5.49 0.0 0.0
GO:0006807 nitrogen compound metabolic process 64.0% (32/50) 1.72 0.0 0.0
GO:0001510 RNA methylation 18.0% (9/50) 4.86 0.0 0.0
GO:0044237 cellular metabolic process 70.0% (35/50) 1.45 0.0 0.0
GO:0005737 cytoplasm 50.0% (25/50) 2.03 0.0 0.0
GO:0071704 organic substance metabolic process 70.0% (35/50) 1.4 0.0 0.0
GO:0044238 primary metabolic process 66.0% (33/50) 1.49 0.0 0.0
GO:0005732 small nucleolar ribonucleoprotein complex 10.0% (5/50) 6.73 0.0 0.0
GO:0008152 metabolic process 70.0% (35/50) 1.28 0.0 0.0
GO:0044085 cellular component biogenesis 18.0% (9/50) 4.08 0.0 0.0
GO:0009451 RNA modification 18.0% (9/50) 3.94 0.0 0.0
GO:0030054 cell junction 24.0% (12/50) 2.96 0.0 0.0
GO:0005911 cell-cell junction 24.0% (12/50) 2.96 0.0 0.0
GO:0009506 plasmodesma 24.0% (12/50) 2.96 0.0 0.0
GO:0005730 nucleolus 16.0% (8/50) 3.94 0.0 0.0
GO:0032259 methylation 18.0% (9/50) 3.28 0.0 1e-06
GO:0043414 macromolecule methylation 18.0% (9/50) 3.28 0.0 1e-06
GO:0009987 cellular process 70.0% (35/50) 1.0 0.0 2e-06
GO:0043226 organelle 92.0% (46/50) 0.6 1e-06 3e-06
GO:0043229 intracellular organelle 92.0% (46/50) 0.6 1e-06 3e-06
GO:0005829 cytosol 26.0% (13/50) 2.27 2e-06 7e-06
GO:0044428 nuclear part 16.0% (8/50) 2.94 8e-06 3.7e-05
GO:0006414 translational elongation 6.0% (3/50) 5.65 2.9e-05 0.000124
GO:0044424 intracellular part 94.0% (47/50) 0.42 3.7e-05 0.000154
GO:0016070 RNA metabolic process 20.0% (10/50) 2.0 0.000159 0.000654
GO:0043412 macromolecule modification 24.0% (12/50) 1.7 0.000221 0.000876
GO:0005774 vacuolar membrane 12.0% (6/50) 2.79 0.000221 0.000889
GO:0044437 vacuolar part 12.0% (6/50) 2.77 0.000236 0.000921
GO:0098805 whole membrane 12.0% (6/50) 2.59 0.00046 0.001769
GO:0016925 protein sumoylation 4.0% (2/50) 5.94 0.000481 0.001823
GO:0098588 bounding membrane of organelle 12.0% (6/50) 2.55 0.00054 0.002013
GO:0044464 cell part 94.0% (47/50) 0.28 0.001485 0.00546
GO:0031090 organelle membrane 12.0% (6/50) 2.21 0.001817 0.006582
GO:0090304 nucleic acid metabolic process 20.0% (10/50) 1.47 0.002739 0.009782
GO:0005618 cell wall 10.0% (5/50) 2.26 0.003826 0.013286
GO:0030312 external encapsulating structure 10.0% (5/50) 2.26 0.003826 0.013286
GO:0006139 nucleobase-containing compound metabolic process 22.0% (11/50) 1.21 0.006449 0.022084
GO:0032446 protein modification by small protein conjugation 6.0% (3/50) 2.98 0.006593 0.022275
GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.0% (1/50) 7.11 0.007213 0.023418
GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.0% (1/50) 7.11 0.007213 0.023418
GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.0% (1/50) 7.11 0.007213 0.023418
GO:0071493 cellular response to UV-B 2.0% (1/50) 6.79 0.009008 0.02815
GO:0031125 rRNA 3'-end processing 2.0% (1/50) 6.79 0.009008 0.02815
GO:0004550 nucleoside diphosphate kinase activity 2.0% (1/50) 6.79 0.009008 0.02815
GO:0003674 molecular_function 88.0% (44/50) 0.27 0.009692 0.029914
GO:0042274 ribosomal small subunit biogenesis 2.0% (1/50) 6.3 0.012589 0.038381
GO:0043628 ncRNA 3'-end processing 2.0% (1/50) 5.94 0.016157 0.048666
GO:0008150 biological_process 88.0% (44/50) 0.24 0.016615 0.048867
GO:0070647 protein modification by small protein conjugation or removal 6.0% (3/50) 2.49 0.016426 0.048888
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_39 0.037 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_134 0.085 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_207 0.157 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_50 0.094 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_95 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_120 0.029 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_160 0.028 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_210 0.03 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_242 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_247 0.023 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_15 0.142 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_146 0.031 Archaeplastida Compare
Gingko biloba HCCA Cluster_29 0.031 Archaeplastida Compare
Gingko biloba HCCA Cluster_129 0.158 Archaeplastida Compare
Gingko biloba HCCA Cluster_152 0.071 Archaeplastida Compare
Gingko biloba HCCA Cluster_234 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_281 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_323 0.033 Archaeplastida Compare
Zea mays HCCA Cluster_43 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_122 0.047 Archaeplastida Compare
Zea mays HCCA Cluster_137 0.228 Archaeplastida Compare
Zea mays HCCA Cluster_201 0.03 Archaeplastida Compare
Zea mays HCCA Cluster_252 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_275 0.042 Archaeplastida Compare
Zea mays HCCA Cluster_350 0.062 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_36 0.154 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_91 0.026 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_94 0.024 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_108 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_115 0.027 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_119 0.03 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_160 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_28 0.168 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_124 0.107 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_155 0.045 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_192 0.105 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_247 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_248 0.059 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_252 0.045 Archaeplastida Compare
Picea abies HCCA Cluster_30 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_90 0.061 Archaeplastida Compare
Picea abies HCCA Cluster_187 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_199 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_208 0.155 Archaeplastida Compare
Picea abies HCCA Cluster_261 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_296 0.043 Archaeplastida Compare
Picea abies HCCA Cluster_365 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_461 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_473 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_109 0.079 Archaeplastida Compare
Oryza sativa HCCA Cluster_140 0.149 Archaeplastida Compare
Oryza sativa HCCA Cluster_175 0.034 Archaeplastida Compare
Oryza sativa HCCA Cluster_212 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_224 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_300 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_318 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_333 0.064 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_88 0.033 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_90 0.06 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_113 0.134 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_180 0.036 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_183 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_86 0.176 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_123 0.038 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_142 0.095 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_207 0.037 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_222 0.12 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_228 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_237 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.056 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_265 0.043 Archaeplastida Compare
Vitis vinifera HCCA Cluster_22 0.08 Archaeplastida Compare
Vitis vinifera HCCA Cluster_60 0.044 Archaeplastida Compare
Vitis vinifera HCCA Cluster_69 0.193 Archaeplastida Compare
Vitis vinifera HCCA Cluster_87 0.038 Archaeplastida Compare
Vitis vinifera HCCA Cluster_132 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.053 Archaeplastida Compare
Vitis vinifera HCCA Cluster_231 0.036 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_25 0.029 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_35 0.092 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_100 0.134 Archaeplastida Compare
Sequences (50) (download table)

InterPro Domains

GO Terms

Family Terms