Coexpression cluster: Cluster_107 (HCCA)

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Average Expression Profile



Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0032774 RNA biosynthetic process 70.59% (36/51) 6.01 0.0 0.0
GO:0006354 DNA-templated transcription, elongation 70.59% (36/51) 7.3 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 78.43% (40/51) 5.5 0.0 0.0
GO:0015979 photosynthesis 76.47% (39/51) 6.81 0.0 0.0
GO:0034654 nucleobase-containing compound biosynthetic process 70.59% (36/51) 4.62 0.0 0.0
GO:0019684 photosynthesis, light reaction 47.06% (24/51) 6.46 0.0 0.0
GO:0018130 heterocycle biosynthetic process 70.59% (36/51) 4.07 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 72.55% (37/51) 3.83 0.0 0.0
GO:0009059 macromolecule biosynthetic process 72.55% (37/51) 3.78 0.0 0.0
GO:0016070 RNA metabolic process 70.59% (36/51) 3.81 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 70.59% (36/51) 3.79 0.0 0.0
GO:0009507 chloroplast 90.2% (46/51) 2.74 0.0 0.0
GO:0009536 plastid 90.2% (46/51) 2.71 0.0 0.0
GO:1901362 organic cyclic compound biosynthetic process 70.59% (36/51) 3.56 0.0 0.0
GO:0090304 nucleic acid metabolic process 70.59% (36/51) 3.29 0.0 0.0
GO:0044435 plastid part 58.82% (30/51) 3.71 0.0 0.0
GO:0044436 thylakoid part 41.18% (21/51) 4.9 0.0 0.0
GO:0009535 chloroplast thylakoid membrane 39.22% (20/51) 5.11 0.0 0.0
GO:0055035 plastid thylakoid membrane 39.22% (20/51) 5.1 0.0 0.0
GO:0042651 thylakoid membrane 39.22% (20/51) 5.05 0.0 0.0
GO:0034357 photosynthetic membrane 39.22% (20/51) 5.05 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 70.59% (36/51) 2.89 0.0 0.0
GO:0044434 chloroplast part 54.9% (28/51) 3.65 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 72.55% (37/51) 2.65 0.0 0.0
GO:0046483 heterocycle metabolic process 70.59% (36/51) 2.69 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 70.59% (36/51) 2.55 0.0 0.0
GO:0044249 cellular biosynthetic process 72.55% (37/51) 2.46 0.0 0.0
GO:0009534 chloroplast thylakoid 31.37% (16/51) 5.35 0.0 0.0
GO:0031976 plastid thylakoid 31.37% (16/51) 5.35 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 70.59% (36/51) 2.48 0.0 0.0
GO:1901576 organic substance biosynthetic process 72.55% (37/51) 2.34 0.0 0.0
GO:0009579 thylakoid 33.33% (17/51) 4.82 0.0 0.0
GO:0044444 cytoplasmic part 96.08% (49/51) 1.47 0.0 0.0
GO:0009058 biosynthetic process 72.55% (37/51) 2.29 0.0 0.0
GO:0043170 macromolecule metabolic process 72.55% (37/51) 2.09 0.0 0.0
GO:0010207 photosystem II assembly 25.49% (13/51) 5.32 0.0 0.0
GO:0032991 protein-containing complex 47.06% (24/51) 3.12 0.0 0.0
GO:0031984 organelle subcompartment 31.37% (16/51) 4.25 0.0 0.0
GO:0006807 nitrogen compound metabolic process 72.55% (37/51) 1.91 0.0 0.0
GO:0044446 intracellular organelle part 58.82% (30/51) 2.39 0.0 0.0
GO:0044422 organelle part 58.82% (30/51) 2.39 0.0 0.0
GO:0044237 cellular metabolic process 78.43% (40/51) 1.62 0.0 0.0
GO:0098796 membrane protein complex 25.49% (13/51) 4.24 0.0 0.0
GO:0044238 primary metabolic process 72.55% (37/51) 1.63 0.0 0.0
GO:0008152 metabolic process 78.43% (40/51) 1.45 0.0 0.0
GO:0034622 cellular protein-containing complex assembly 25.49% (13/51) 3.95 0.0 0.0
GO:0065003 protein-containing complex assembly 25.49% (13/51) 3.89 0.0 0.0
GO:0046906 tetrapyrrole binding 13.73% (7/51) 6.34 0.0 0.0
GO:0043933 protein-containing complex subunit organization 25.49% (13/51) 3.86 0.0 0.0
GO:0016651 oxidoreductase activity, acting on NAD(P)H 15.69% (8/51) 5.66 0.0 0.0
GO:0055114 oxidation-reduction process 23.53% (12/51) 4.07 0.0 0.0
GO:0071704 organic substance metabolic process 72.55% (37/51) 1.45 0.0 0.0
GO:0015980 energy derivation by oxidation of organic compounds 13.73% (7/51) 5.62 0.0 0.0
GO:0045333 cellular respiration 13.73% (7/51) 5.62 0.0 0.0
GO:0000312 plastid small ribosomal subunit 9.8% (5/51) 7.32 0.0 0.0
GO:0009987 cellular process 78.43% (40/51) 1.16 0.0 0.0
GO:0003959 NADPH dehydrogenase activity 7.84% (4/51) 8.28 0.0 0.0
GO:0022607 cellular component assembly 25.49% (13/51) 3.28 0.0 0.0
GO:0048037 cofactor binding 13.73% (7/51) 5.19 0.0 0.0
GO:0000314 organellar small ribosomal subunit 9.8% (5/51) 6.76 0.0 0.0
GO:0009767 photosynthetic electron transport chain 11.76% (6/51) 5.65 0.0 0.0
GO:0043231 intracellular membrane-bounded organelle 96.08% (49/51) 0.68 0.0 0.0
GO:0010287 plastoglobule 11.76% (6/51) 5.58 0.0 0.0
GO:0043227 membrane-bounded organelle 96.08% (49/51) 0.68 0.0 0.0
GO:0016168 chlorophyll binding 9.8% (5/51) 6.4 0.0 0.0
GO:0043229 intracellular organelle 96.08% (49/51) 0.66 0.0 0.0
GO:0043226 organelle 96.08% (49/51) 0.66 0.0 0.0
GO:0044425 membrane part 25.49% (13/51) 2.97 0.0 0.0
GO:0022900 electron transport chain 11.76% (6/51) 5.16 0.0 0.0
GO:0009512 cytochrome b6f complex 5.88% (3/51) 8.35 0.0 0.0
GO:0009521 photosystem 7.84% (4/51) 6.22 0.0 1e-06
GO:0016020 membrane 47.06% (24/51) 1.47 1e-06 4e-06
GO:0009538 photosystem I reaction center 5.88% (3/51) 7.21 1e-06 6e-06
GO:0044391 ribosomal subunit 13.73% (7/51) 3.7 1e-06 6e-06
GO:0009765 photosynthesis, light harvesting 5.88% (3/51) 6.86 2e-06 1.2e-05
GO:0009773 photosynthetic electron transport in photosystem I 7.84% (4/51) 5.44 2e-06 1.3e-05
GO:1990904 ribonucleoprotein complex 15.69% (8/51) 3.13 3e-06 1.9e-05
GO:0044424 intracellular part 96.08% (49/51) 0.45 4e-06 2.1e-05
GO:0015935 small ribosomal subunit 9.8% (5/51) 4.36 5e-06 2.5e-05
GO:0006412 translation 13.73% (7/51) 3.38 5e-06 2.5e-05
GO:0043043 peptide biosynthetic process 13.73% (7/51) 3.36 5e-06 2.7e-05
GO:0006518 peptide metabolic process 13.73% (7/51) 3.31 6e-06 3.3e-05
GO:0043604 amide biosynthetic process 13.73% (7/51) 3.22 9e-06 5e-05
GO:0009523 photosystem II 5.88% (3/51) 6.14 1e-05 5.3e-05
GO:0009532 plastid stroma 15.69% (8/51) 2.88 1.1e-05 5.8e-05
GO:0009570 chloroplast stroma 15.69% (8/51) 2.88 1.1e-05 5.8e-05
GO:0016491 oxidoreductase activity 19.61% (10/51) 2.42 1.4e-05 6.9e-05
GO:0070069 cytochrome complex 5.88% (3/51) 5.91 1.7e-05 8.3e-05
GO:0009539 photosystem II reaction center 3.92% (2/51) 8.08 2e-05 9.8e-05
GO:0098807 chloroplast thylakoid membrane protein complex 5.88% (3/51) 5.71 2.6e-05 0.000125
GO:0043603 cellular amide metabolic process 13.73% (7/51) 2.88 4.4e-05 0.00021
GO:0009769 photosynthesis, light harvesting in photosystem II 3.92% (2/51) 7.5 5e-05 0.000237
GO:0003735 structural constituent of ribosome 11.76% (6/51) 3.18 5.1e-05 0.000238
GO:0009941 chloroplast envelope 13.73% (7/51) 2.82 5.5e-05 0.000255
GO:0009526 plastid envelope 13.73% (7/51) 2.81 5.8e-05 0.000267
GO:0009533 chloroplast stromal thylakoid 3.92% (2/51) 7.08 9.3e-05 0.000423
GO:0009295 nucleoid 5.88% (3/51) 5.08 9.6e-05 0.000435
GO:1901566 organonitrogen compound biosynthetic process 21.57% (11/51) 1.93 0.000108 0.000483
GO:0031975 envelope 13.73% (7/51) 2.66 0.000113 0.000494
GO:0031967 organelle envelope 13.73% (7/51) 2.66 0.000113 0.000494
GO:0016779 nucleotidyltransferase activity 7.84% (4/51) 3.93 0.000138 0.000599
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 5.88% (3/51) 4.83 0.000161 0.000692
GO:0005198 structural molecule activity 11.76% (6/51) 2.84 0.000183 0.000776
GO:0097747 RNA polymerase activity 5.88% (3/51) 4.69 0.000217 0.000905
GO:0034062 5'-3' RNA polymerase activity 5.88% (3/51) 4.69 0.000217 0.000905
GO:0044464 cell part 96.08% (49/51) 0.32 0.000232 0.000958
GO:0009654 photosystem II oxygen evolving complex 3.92% (2/51) 6.38 0.000257 0.001041
GO:0020037 heme binding 3.92% (2/51) 6.38 0.000257 0.001041
GO:0000311 plastid large ribosomal subunit 3.92% (2/51) 6.0 0.000446 0.00179
GO:0030095 chloroplast photosystem II 3.92% (2/51) 5.83 0.000559 0.002225
GO:0000315 organellar large ribosomal subunit 3.92% (2/51) 5.69 0.000685 0.002702
GO:0071840 cellular component organization or biogenesis 27.45% (14/51) 1.34 0.000792 0.003098
GO:0016043 cellular component organization 25.49% (13/51) 1.34 0.001285 0.004979
GO:0015252 proton channel activity 1.96% (1/51) 9.08 0.001844 0.007024
GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity 1.96% (1/51) 9.08 0.001844 0.007024
GO:0003954 NADH dehydrogenase activity 3.92% (2/51) 4.91 0.002018 0.00762
GO:0009265 2'-deoxyribonucleotide biosynthetic process 1.96% (1/51) 8.08 0.003685 0.01281
GO:0009263 deoxyribonucleotide biosynthetic process 1.96% (1/51) 8.08 0.003685 0.01281
GO:0009216 purine deoxyribonucleoside triphosphate biosynthetic process 1.96% (1/51) 8.08 0.003685 0.01281
GO:0009215 purine deoxyribonucleoside triphosphate metabolic process 1.96% (1/51) 8.08 0.003685 0.01281
GO:0009153 purine deoxyribonucleotide biosynthetic process 1.96% (1/51) 8.08 0.003685 0.01281
GO:0009151 purine deoxyribonucleotide metabolic process 1.96% (1/51) 8.08 0.003685 0.01281
GO:0006176 dATP biosynthetic process from ADP 1.96% (1/51) 8.08 0.003685 0.01281
GO:0006175 dATP biosynthetic process 1.96% (1/51) 8.08 0.003685 0.01281
GO:0046060 dATP metabolic process 1.96% (1/51) 8.08 0.003685 0.01281
GO:0046385 deoxyribose phosphate biosynthetic process 1.96% (1/51) 8.08 0.003685 0.01281
GO:0008150 biological_process 90.2% (46/51) 0.27 0.004854 0.016742
GO:0042776 mitochondrial ATP synthesis coupled proton transport 1.96% (1/51) 7.5 0.005522 0.018051
GO:0009200 deoxyribonucleoside triphosphate metabolic process 1.96% (1/51) 7.5 0.005522 0.018051
GO:0009202 deoxyribonucleoside triphosphate biosynthetic process 1.96% (1/51) 7.5 0.005522 0.018051
GO:0009262 deoxyribonucleotide metabolic process 1.96% (1/51) 7.5 0.005522 0.018051
GO:0006119 oxidative phosphorylation 1.96% (1/51) 7.5 0.005522 0.018051
GO:0019692 deoxyribose phosphate metabolic process 1.96% (1/51) 7.5 0.005522 0.018051
GO:0009394 2'-deoxyribonucleotide metabolic process 1.96% (1/51) 7.5 0.005522 0.018051
GO:0051082 unfolded protein binding 1.96% (1/51) 7.08 0.007357 0.023868
GO:0034645 cellular macromolecule biosynthetic process 13.73% (7/51) 1.57 0.008735 0.028133
GO:0015977 carbon fixation 1.96% (1/51) 6.76 0.009187 0.02895
GO:0009768 photosynthesis, light harvesting in photosystem I 1.96% (1/51) 6.76 0.009187 0.02895
GO:0016984 ribulose-bisphosphate carboxylase activity 1.96% (1/51) 6.76 0.009187 0.02895
GO:0140098 catalytic activity, acting on RNA 5.88% (3/51) 2.78 0.009563 0.029918
GO:0009055 electron transfer activity 3.92% (2/51) 3.69 0.010555 0.032787
GO:1990542 mitochondrial transmembrane transport 1.96% (1/51) 6.5 0.011015 0.033273
GO:0003964 RNA-directed DNA polymerase activity 1.96% (1/51) 6.5 0.011015 0.033273
GO:0009544 chloroplast ATP synthase complex 1.96% (1/51) 6.5 0.011015 0.033273
GO:0009522 photosystem I 1.96% (1/51) 6.5 0.011015 0.033273
GO:0009772 photosynthetic electron transport in photosystem II 1.96% (1/51) 6.28 0.012839 0.038518
GO:0043168 anion binding 9.8% (5/51) 1.8 0.014206 0.042329
GO:0048564 photosystem I assembly 1.96% (1/51) 6.08 0.01466 0.043386
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_61 0.037 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_92 0.197 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_199 0.037 Archaeplastida Compare
Gingko biloba HCCA Cluster_30 0.036 Archaeplastida Compare
Gingko biloba HCCA Cluster_78 0.158 Archaeplastida Compare
Gingko biloba HCCA Cluster_89 0.066 Archaeplastida Compare
Gingko biloba HCCA Cluster_297 0.036 Archaeplastida Compare
Zea mays HCCA Cluster_44 0.032 Archaeplastida Compare
Zea mays HCCA Cluster_83 0.042 Archaeplastida Compare
Zea mays HCCA Cluster_93 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_109 0.049 Archaeplastida Compare
Zea mays HCCA Cluster_149 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_160 0.155 Archaeplastida Compare
Zea mays HCCA Cluster_255 0.074 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_2 0.035 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_8 0.096 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_154 0.036 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_298 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_9 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_82 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_236 0.049 Archaeplastida Compare
Picea abies HCCA Cluster_54 0.029 Archaeplastida Compare
Oryza sativa HCCA Cluster_4 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_125 0.467 Archaeplastida Compare
Oryza sativa HCCA Cluster_144 0.02 Archaeplastida Compare
Oryza sativa HCCA Cluster_233 0.097 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_27 0.214 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_1 0.059 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_3 0.053 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_4 0.068 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_5 0.293 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_16 0.051 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_18 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_24 0.028 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_34 0.032 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_48 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_76 0.051 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_83 0.472 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_84 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_87 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_90 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_93 0.043 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_95 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_102 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_108 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_112 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_113 0.037 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_129 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_142 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_149 0.127 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_172 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_174 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_187 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_199 0.048 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_282 0.021 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_287 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_312 0.041 Archaeplastida Compare
Vitis vinifera HCCA Cluster_20 0.043 Archaeplastida Compare
Vitis vinifera HCCA Cluster_25 0.063 Archaeplastida Compare
Vitis vinifera HCCA Cluster_71 0.027 Archaeplastida Compare
Vitis vinifera HCCA Cluster_99 0.061 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_37 0.025 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_94 0.02 Archaeplastida Compare
Sequences (51) (download table)



InterPro Domains



GO Terms



Family Terms