Coexpression cluster: Cluster_233 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0005634 nucleus 64.79% (46/71) 0.95 0.0 5.5e-05
GO:0097159 organic cyclic compound binding 30.99% (22/71) 1.54 3e-06 0.00069
GO:1901363 heterocyclic compound binding 30.99% (22/71) 1.55 2e-06 0.000929
GO:0003676 nucleic acid binding 25.35% (18/71) 1.72 5e-06 0.001
GO:0016569 covalent chromatin modification 11.27% (8/71) 2.97 8e-06 0.001099
GO:0006325 chromatin organization 12.68% (9/71) 2.73 8e-06 0.001284
GO:0005829 cytosol 19.72% (14/71) 1.87 2.2e-05 0.002459
GO:0016570 histone modification 9.86% (7/71) 2.96 3.3e-05 0.00288
GO:0031323 regulation of cellular metabolic process 25.35% (18/71) 1.52 3.3e-05 0.003219
GO:0006338 chromatin remodeling 4.23% (3/71) 5.38 5.1e-05 0.003972
GO:2000026 regulation of multicellular organismal development 11.27% (8/71) 2.51 7.8e-05 0.004381
GO:0006479 protein methylation 8.45% (6/71) 3.02 9.8e-05 0.004528
GO:0008213 protein alkylation 8.45% (6/71) 3.02 9.8e-05 0.004528
GO:0050793 regulation of developmental process 14.08% (10/71) 2.15 7.8e-05 0.004676
GO:0051239 regulation of multicellular organismal process 11.27% (8/71) 2.45 0.000108 0.0047
GO:0044428 nuclear part 11.27% (8/71) 2.43 0.000115 0.004728
GO:0016571 histone methylation 8.45% (6/71) 3.04 9.3e-05 0.004846
GO:0036211 protein modification process 19.72% (14/71) 1.71 7.6e-05 0.004969
GO:0006464 cellular protein modification process 19.72% (14/71) 1.71 7.6e-05 0.004969
GO:0019222 regulation of metabolic process 25.35% (18/71) 1.36 0.00014 0.005481
GO:0051171 regulation of nitrogen compound metabolic process 22.54% (16/71) 1.46 0.000166 0.006202
GO:0043412 macromolecule modification 21.13% (15/71) 1.52 0.000178 0.006325
GO:0019219 regulation of nucleobase-containing compound metabolic process 21.13% (15/71) 1.48 0.000229 0.007796
GO:0080090 regulation of primary metabolic process 22.54% (16/71) 1.37 0.000335 0.010094
GO:0050794 regulation of cellular process 30.99% (22/71) 1.09 0.000323 0.010105
GO:0060255 regulation of macromolecule metabolic process 22.54% (16/71) 1.38 0.000311 0.010147
GO:0140098 catalytic activity, acting on RNA 7.04% (5/71) 3.04 0.000364 0.010182
GO:0045814 negative regulation of gene expression, epigenetic 7.04% (5/71) 3.03 0.000378 0.010216
GO:0006342 chromatin silencing 7.04% (5/71) 3.04 0.000357 0.010357
GO:0019538 protein metabolic process 23.94% (17/71) 1.26 0.000522 0.013616
GO:0043227 membrane-bounded organelle 78.87% (56/71) 0.39 0.000619 0.013848
GO:0043231 intracellular membrane-bounded organelle 78.87% (56/71) 0.39 0.000585 0.013876
GO:0044424 intracellular part 87.32% (62/71) 0.31 0.000614 0.014138
GO:0000159 protein phosphatase type 2A complex 2.82% (2/71) 5.8 0.00058 0.014184
GO:0018193 peptidyl-amino acid modification 8.45% (6/71) 2.54 0.000579 0.014636
GO:0044267 cellular protein metabolic process 19.72% (14/71) 1.4 0.000682 0.014831
GO:0040029 regulation of gene expression, epigenetic 7.04% (5/71) 2.81 0.00075 0.015879
GO:0043226 organelle 78.87% (56/71) 0.38 0.000908 0.017779
GO:0043229 intracellular organelle 78.87% (56/71) 0.38 0.000897 0.018012
GO:0005730 nucleolus 7.04% (5/71) 2.76 0.000879 0.018111
GO:0050789 regulation of biological process 32.39% (23/71) 0.94 0.001052 0.020097
GO:0016458 gene silencing 7.04% (5/71) 2.68 0.001118 0.020844
GO:0043170 macromolecule metabolic process 32.39% (23/71) 0.93 0.001147 0.02089
GO:0051252 regulation of RNA metabolic process 18.31% (13/71) 1.35 0.001458 0.022392
GO:0006355 regulation of transcription, DNA-templated 18.31% (13/71) 1.36 0.001362 0.022686
GO:2001141 regulation of RNA biosynthetic process 18.31% (13/71) 1.36 0.001362 0.022686
GO:1903506 regulation of nucleic acid-templated transcription 18.31% (13/71) 1.36 0.001362 0.022686
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity 2.82% (2/71) 5.15 0.001452 0.02274
GO:0004843 thiol-dependent ubiquitin-specific protease activity 2.82% (2/71) 5.15 0.001452 0.02274
GO:0101005 ubiquitinyl hydrolase activity 2.82% (2/71) 5.15 0.001452 0.02274
GO:0010468 regulation of gene expression 19.72% (14/71) 1.3 0.001296 0.023056
GO:0048580 regulation of post-embryonic development 8.45% (6/71) 2.27 0.001543 0.023233
GO:0090304 nucleic acid metabolic process 18.31% (13/71) 1.34 0.001596 0.023584
GO:0008287 protein serine/threonine phosphatase complex 2.82% (2/71) 4.96 0.001876 0.026238
GO:1903293 phosphatase complex 2.82% (2/71) 4.96 0.001876 0.026238
GO:0051052 regulation of DNA metabolic process 5.63% (4/71) 2.94 0.001865 0.027049
GO:0043414 macromolecule methylation 8.45% (6/71) 2.19 0.002047 0.027628
GO:0032259 methylation 8.45% (6/71) 2.19 0.002047 0.027628
GO:1902494 catalytic complex 8.45% (6/71) 2.18 0.002128 0.028235
GO:0061982 meiosis I cell cycle process 4.23% (3/71) 3.52 0.002321 0.028849
GO:0003677 DNA binding 14.08% (10/71) 1.52 0.002389 0.029226
GO:0009909 regulation of flower development 7.04% (5/71) 2.44 0.002316 0.029247
GO:2000112 regulation of cellular macromolecule biosynthetic process 18.31% (13/71) 1.28 0.0023 0.029526
GO:0010556 regulation of macromolecule biosynthetic process 18.31% (13/71) 1.28 0.0023 0.029526
GO:1902679 negative regulation of RNA biosynthetic process 7.04% (5/71) 2.34 0.003093 0.02953
GO:1903507 negative regulation of nucleic acid-templated transcription 7.04% (5/71) 2.34 0.003093 0.02953
GO:0045892 negative regulation of transcription, DNA-templated 7.04% (5/71) 2.34 0.003093 0.02953
GO:0031326 regulation of cellular biosynthetic process 18.31% (13/71) 1.25 0.002807 0.029698
GO:0006807 nitrogen compound metabolic process 33.8% (24/71) 0.8 0.002886 0.029732
GO:2000011 regulation of adaxial/abaxial pattern formation 1.41% (1/71) 8.61 0.002567 0.030003
GO:0033749 histone demethylase activity (H4-R3 specific) 1.41% (1/71) 8.61 0.002567 0.030003
GO:0033746 histone demethylase activity (H3-R2 specific) 1.41% (1/71) 8.61 0.002567 0.030003
GO:0098813 nuclear chromosome segregation 4.23% (3/71) 3.42 0.002802 0.030054
GO:0022402 cell cycle process 8.45% (6/71) 2.1 0.002765 0.030066
GO:0051276 chromosome organization 5.63% (4/71) 2.77 0.002884 0.030106
GO:0034968 histone lysine methylation 5.63% (4/71) 2.75 0.002975 0.030253
GO:0006259 DNA metabolic process 9.86% (7/71) 1.87 0.003057 0.030301
GO:0018022 peptidyl-lysine methylation 5.63% (4/71) 2.75 0.003021 0.030331
GO:0031047 gene silencing by RNA 5.63% (4/71) 2.79 0.00275 0.030332
GO:0006399 tRNA metabolic process 4.23% (3/71) 3.44 0.00273 0.030535
GO:0045132 meiotic chromosome segregation 4.23% (3/71) 3.44 0.00273 0.030535
GO:0006310 DNA recombination 5.63% (4/71) 2.72 0.003261 0.030763
GO:0051253 negative regulation of RNA metabolic process 7.04% (5/71) 2.32 0.003304 0.030798
GO:0019783 ubiquitin-like protein-specific protease activity 2.82% (2/71) 4.7 0.002698 0.031072
GO:0048831 regulation of shoot system development 7.04% (5/71) 2.31 0.003451 0.031786
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 7.04% (5/71) 2.29 0.00364 0.032391
GO:0010558 negative regulation of macromolecule biosynthetic process 7.04% (5/71) 2.29 0.00364 0.032391
GO:1903046 meiotic cell cycle process 5.63% (4/71) 2.68 0.003565 0.032458
GO:0045934 negative regulation of nucleobase-containing compound metabolic process 7.04% (5/71) 2.28 0.003758 0.03306
GO:0044260 cellular macromolecule metabolic process 25.35% (18/71) 0.95 0.00392 0.034106
GO:0044464 cell part 90.14% (64/71) 0.22 0.00406 0.03455
GO:0031327 negative regulation of cellular biosynthetic process 7.04% (5/71) 2.25 0.004042 0.034782
GO:0009890 negative regulation of biosynthetic process 7.04% (5/71) 2.24 0.004212 0.035082
GO:0016043 cellular component organization 21.13% (15/71) 1.07 0.004191 0.035288
GO:0009889 regulation of biosynthetic process 18.31% (13/71) 1.18 0.004288 0.035341
GO:0007059 chromosome segregation 4.23% (3/71) 3.19 0.004401 0.035896
GO:2000241 regulation of reproductive process 7.04% (5/71) 2.19 0.004892 0.03949
GO:0043985 histone H4-R3 methylation 1.41% (1/71) 7.61 0.005128 0.039756
GO:0004815 aspartate-tRNA ligase activity 1.41% (1/71) 7.61 0.005128 0.039756
GO:0045694 regulation of embryo sac egg cell differentiation 1.41% (1/71) 7.61 0.005128 0.039756
GO:0016805 dipeptidase activity 1.41% (1/71) 7.61 0.005128 0.039756
GO:0007131 reciprocal meiotic recombination 4.23% (3/71) 3.1 0.00521 0.039992
GO:0035825 homologous recombination 4.23% (3/71) 3.09 0.005317 0.040417
GO:0007062 sister chromatid cohesion 4.23% (3/71) 3.05 0.005758 0.043348
GO:0004812 aminoacyl-tRNA ligase activity 2.82% (2/71) 4.05 0.00652 0.04641
GO:0043039 tRNA aminoacylation 2.82% (2/71) 4.05 0.00652 0.04641
GO:0016875 ligase activity, forming carbon-oxygen bonds 2.82% (2/71) 4.05 0.00652 0.04641
GO:0043038 amino acid activation 2.82% (2/71) 4.05 0.00652 0.04641
GO:0006418 tRNA aminoacylation for protein translation 2.82% (2/71) 4.05 0.00652 0.04641
GO:0006499 N-terminal protein myristoylation 4.23% (3/71) 2.97 0.006704 0.046867
GO:0006498 N-terminal protein lipidation 4.23% (3/71) 2.97 0.006704 0.046867
GO:0051726 regulation of cell cycle 5.63% (4/71) 2.42 0.006797 0.047097
GO:0018377 protein myristoylation 4.23% (3/71) 2.95 0.006954 0.047762
GO:0006139 nucleobase-containing compound metabolic process 19.72% (14/71) 1.05 0.00643 0.04795
GO:0030856 regulation of epithelial cell differentiation 1.41% (1/71) 7.02 0.007683 0.048512
GO:0010445 nuclear dicing body 1.41% (1/71) 7.02 0.007683 0.048512
GO:0045604 regulation of epidermal cell differentiation 1.41% (1/71) 7.02 0.007683 0.048512
GO:0000002 mitochondrial genome maintenance 1.41% (1/71) 7.02 0.007683 0.048512
GO:0045682 regulation of epidermis development 1.41% (1/71) 7.02 0.007683 0.048512
GO:0032042 mitochondrial DNA metabolic process 1.41% (1/71) 7.02 0.007683 0.048512
GO:0031365 N-terminal protein amino acid modification 4.23% (3/71) 2.93 0.00721 0.049088
GO:0051172 negative regulation of nitrogen compound metabolic process 7.04% (5/71) 2.05 0.007272 0.049089
GO:1901564 organonitrogen compound metabolic process 26.76% (19/71) 0.83 0.007478 0.049619
GO:0065007 biological regulation 32.39% (23/71) 0.72 0.007424 0.049687
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_24 0.034 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_27 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_31 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_39 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_40 0.027 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_58 0.025 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_74 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_122 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_139 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_152 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_167 0.023 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_176 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_184 0.026 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_190 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_214 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_218 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_268 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_277 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_27 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_114 0.02 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_185 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_269 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_73 0.022 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_131 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_4 0.023 Archaeplastida Compare
Gingko biloba HCCA Cluster_14 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_41 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_107 0.022 Archaeplastida Compare
Gingko biloba HCCA Cluster_120 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_131 0.029 Archaeplastida Compare
Gingko biloba HCCA Cluster_267 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_289 0.024 Archaeplastida Compare
Gingko biloba HCCA Cluster_328 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_58 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_65 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_110 0.034 Archaeplastida Compare
Zea mays HCCA Cluster_136 0.022 Archaeplastida Compare
Zea mays HCCA Cluster_158 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_181 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_258 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_260 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_292 0.023 Archaeplastida Compare
Zea mays HCCA Cluster_296 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_309 0.03 Archaeplastida Compare
Zea mays HCCA Cluster_328 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_329 0.029 Archaeplastida Compare
Zea mays HCCA Cluster_352 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_363 0.025 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_22 0.034 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_91 0.021 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_156 0.024 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_168 0.025 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_11 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.027 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_237 0.032 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_248 0.019 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_263 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_267 0.036 Archaeplastida Compare
Picea abies HCCA Cluster_9 0.024 Archaeplastida Compare
Picea abies HCCA Cluster_220 0.035 Archaeplastida Compare
Picea abies HCCA Cluster_239 0.021 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_393 0.04 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.029 Archaeplastida Compare
Picea abies HCCA Cluster_427 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_492 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_18 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_40 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_141 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_176 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_191 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_211 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_219 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_234 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_269 0.037 Archaeplastida Compare
Oryza sativa HCCA Cluster_293 0.024 Archaeplastida Compare
Oryza sativa HCCA Cluster_307 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_346 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_347 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_348 0.026 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_75 0.022 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_108 0.021 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_201 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_8 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_26 0.036 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_50 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_53 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_77 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_131 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_173 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_185 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_252 0.023 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_254 0.019 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_272 0.026 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_275 0.04 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_283 0.027 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_284 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_34 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_63 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_96 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_121 0.021 Archaeplastida Compare
Vitis vinifera HCCA Cluster_123 0.024 Archaeplastida Compare
Vitis vinifera HCCA Cluster_164 0.027 Archaeplastida Compare
Vitis vinifera HCCA Cluster_189 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_196 0.022 Archaeplastida Compare
Vitis vinifera HCCA Cluster_212 0.029 Archaeplastida Compare
Vitis vinifera HCCA Cluster_219 0.023 Archaeplastida Compare
Vitis vinifera HCCA Cluster_221 0.03 Archaeplastida Compare
Vitis vinifera HCCA Cluster_236 0.031 Archaeplastida Compare
Vitis vinifera HCCA Cluster_241 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_121 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_152 0.025 Archaeplastida Compare
Sequences (71) (download table)

InterPro Domains

GO Terms

Family Terms