Coexpression cluster: Cluster_68 (HCCA)

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0048285 organelle fission 2.0% (1/50) 8.95 0.002024 0.023615
GO:0009439 cyanate metabolic process 2.0% (1/50) 8.95 0.002024 0.023615
GO:0044438 microbody part 2.0% (1/50) 8.95 0.002024 0.023615
GO:0010257 NADH dehydrogenase complex assembly 2.0% (1/50) 8.95 0.002024 0.023615
GO:0044439 peroxisomal part 2.0% (1/50) 8.95 0.002024 0.023615
GO:0032981 mitochondrial respiratory chain complex I assembly 2.0% (1/50) 8.95 0.002024 0.023615
GO:0031231 intrinsic component of peroxisomal membrane 2.0% (1/50) 8.95 0.002024 0.023615
GO:0016559 peroxisome fission 2.0% (1/50) 8.95 0.002024 0.023615
GO:0005779 integral component of peroxisomal membrane 2.0% (1/50) 8.95 0.002024 0.023615
GO:0022607 cellular component assembly 4.0% (2/50) 4.36 0.004268 0.039833
Cluster_253 heatmap <a href="/go/view/14822" data-toggle="tooltip" data-placement="top" title=""The component of the organelle membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane." [GOC:dos, GOC:mah]">GO:0031300</a></td> <td>intrinsic component of organelle membrane</td> <td>2.0% <span class="text-muted">(1/50)</span></td> <td>7.95</td> <td>0.004044</td> <td>0.040442</td> </tr> <tr> <td><a href="/go/view/14823" data-toggle="tooltip" data-placement="top" title=""The component of the organelle membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane." [GOC:dos, GOC:mah]">GO:0031301</a></td> <td>integral component of organelle membrane</td> <td>2.0% <span class="text-muted">(1/50)</span></td> <td>7.95</td> <td>0.004044</td> <td>0.040442</td> </tr> </tbody> </table> </div> </div> </div> <div class="panel panel-default"> <div class="panel-heading">Enriched Clades <span class="text-muted">(corrected p-value < 0.05)</span> (<a id="DownloadEnrichedClades" href="#">download table</a>)</div> <div class="panel-scroll"> <div class="table-responsive"> <table class="table table-striped table-separated" id="EnrichedClades"> <thead> <tr> <th data-sort="string-ins"><span class="sort-icon"></span>Clade</th> <th data-sort="float"><span class="sort-icon"></span>% in cluster</th> <th data-sort="float"><span class="sort-icon"></span>Enrichment <span class="text-muted">log2</span></th> <th data-sort="float"><span class="sort-icon"></span>p-value</th> <th data-sort="float"><span class="sort-icon"></span>Corrected p-value</th> <th data-sort="string-ins"><span class="sort-icon"></span>Gene Family Method</th> </tr> </thead> <tbody> <tr> <td colspan="6"><span class="text-muted"><em>No enriched Clades found</em></span></td> </tr> </tbody> </table> </div> </div> </div> <div class="panel panel-default"> <div class="panel-heading">Similar Clusters (<a id="DownloadSimilarClusters" href="#">download table</a>)</div> <div class="panel-scroll"> <div class="table-responsive"> <table class="table table-striped table-separated" id="SimilarClusters"> <thead> <tr> <th data-sort="string-ins"><span class="sort-icon"></span>Species</th> <th data-sort="string-ins"><span class="sort-icon"></span>Clustering Method</th> <th data-sort="string-ins"><span class="sort-icon"></span>Target</th> <th data-sort="float"><span class="sort-icon"></span>Jaccard index</th> <th data-sort="string-ins"><span class="sort-icon"></span>Gene Family Method <span class="text-muted">(for comparison)</span></th> <th>Actions</th> </tr> </thead> <tbody> <tr> <td><em>Arabidopsis thaliana</em></td> <td>HCCA</td> <td><a href="/cluster/view/347">Cluster_16</a></td> <td>0.02</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/347/928/1">Compare</a></td> </tr> <tr> <td><em>Arabidopsis thaliana</em></td> <td>HCCA</td> <td><a href="/cluster/view/241">Cluster_80</a></td> <td>0.019</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/241/928/1">Compare</a></td> </tr> <tr> <td><em>Arabidopsis thaliana</em></td> <td>HCCA</td> <td><a href="/cluster/view/219">Cluster_239</a></td> <td>0.03</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/219/928/1">Compare</a></td> </tr> <tr> <td><em>Amborella trichopoda</em></td> <td>HCCA</td> <td><a href="/cluster/view/764">Cluster_59</a></td> <td>0.026</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/764/928/1">Compare</a></td> </tr> <tr> <td><em>Amborella trichopoda</em></td> <td>HCCA</td> <td><a href="/cluster/view/841">Cluster_216</a></td> <td>0.019</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/841/928/1">Compare</a></td> </tr> <tr> <td><em>Amborella trichopoda</em></td> <td>HCCA</td> <td><a href="/cluster/view/724">Cluster_258</a></td> <td>0.022</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/724/928/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/1021">Cluster_11</a></td> <td>0.024</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/1021/928/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/989">Cluster_21</a></td> <td>0.024</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/989/928/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/1002">Cluster_49</a></td> <td>0.019</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/1002/928/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/877">Cluster_56</a></td> <td>0.024</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/877/928/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_70</a></td> <td>0.023</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/958/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_76</a></td> <td>0.02</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/1066/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_82</a></td> <td>0.025</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/1040/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_137</a></td> <td>0.019</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/998/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_149</a></td> <td>0.019</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/955/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_157</a></td> <td>0.023</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/904/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_169</a></td> <td>0.036</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/937/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_188</a></td> <td>0.02</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/1132/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_189</a></td> <td>0.019</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/981/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_192</a></td> <td>0.022</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/911/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_219</a></td> <td>0.02</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/1149/1">Compare</a></td> </tr> <tr> <td><em>Cyanophora paradoxa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_223</a></td> <td>0.023</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/999/1">Compare</a></td> </tr> <tr> <td><em>Gingko biloba</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_111</a></td> <td>0.026</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/1656/1">Compare</a></td> </tr> <tr> <td><em>Marchantia polymorpha</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_11</a></td> <td>0.02</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/3088/1">Compare</a></td> </tr> <tr> <td><em>Physcomitrella patens</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_15</a></td> <td>0.021</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/3339/1">Compare</a></td> </tr> <tr> <td><em>Physcomitrella patens</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_177</a></td> <td>0.02</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/3546/1">Compare</a></td> </tr> <tr> <td><em>Picea abies</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_400</a></td> <td>0.02</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/4079/1">Compare</a></td> </tr> <tr> <td><em>Picea abies</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_432</a></td> <td>0.023</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/4958/1">Compare</a></td> </tr> <tr> <td><em>Picea abies</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_502</a></td> <td>0.023</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/4148/1">Compare</a></td> </tr> <tr> <td><em>Oryza sativa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_189</a></td> <td>0.025</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/5617/1">Compare</a></td> </tr> <tr> <td><em>Oryza sativa</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_429</a></td> <td>0.02</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/5603/1">Compare</a></td> </tr> <tr> <td><em>Selaginella moellendorffii</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_189</a></td> <td>0.019</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/6241/1">Compare</a></td> </tr> <tr> <td><em>Solanum lycopersicum</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_50</a></td> <td>0.022</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/6752/1">Compare</a></td> </tr> <tr> <td><em>Vitis vinifera</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_89</a></td> <td>0.022</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/7295/1">Compare</a></td> </tr> <tr> <td><em>Chlamydomonas reinhardtii</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_84</a></td> <td>0.021</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/7814/1">Compare</a></td> </tr> <tr> <td><em>Chlamydomonas reinhardtii</em></td> <td>HCCA</td> <td><a href="/cluster/view/928">Cluster_156</a></td> <td>0.021</td> <td>Archaeplastida</td> <td><a href="/graph_comparison/cluster/928/7691/1">Compare</a></td> </tr> </tbody> </table> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12"> <div class="panel panel-default planet-pagination-container"> <div class="panel-heading">Sequences (50) (<a href="/cluster/download/928" download="table.csv">download table</a>)</div> <div style="height:300px;overflow-y:auto;" class="planet-pagination" base-url="/cluster/sequences/928/" page-count="2" current_page="1" key="clusters"></div> <div class="panel-body"> <button class="btn btn-primary planet-pagination-first"><span class="glyphicon glyphicon-fast-backward" aria-hidden="true"></span></button> <button class="btn btn-primary planet-pagination-back"><span class="glyphicon glyphicon-step-backward" aria-hidden="true"></span></button> <button class="btn btn-primary planet-pagination-next"><span class="glyphicon glyphicon-step-forward" aria-hidden="true"></span></button> <button class="btn btn-primary planet-pagination-last"><span class="glyphicon glyphicon-fast-forward" aria-hidden="true"></span></button> </div> </div> </div> </div> <br> <h3 class="banner-blue" id="associated_things">Associations</h3> <div class="row"> <div class="col-lg-12"> <div class="panel panel-default planet-pagination-container"> <div class="panel-heading">InterPro Domains</div> <div style="height:300px;overflow-y:auto;" class="planet-ajax-table" base-url="/cluster/ajax/interpro/928" key="interpro_ajax"></div> </div> </div> </div> <br> <div class="row"> <div class="col-lg-12"> <div class="panel panel-default planet-pagination-container"> <div class="panel-heading">GO Terms</div> <div style="height:300px;overflow-y:auto;" class="planet-ajax-table" base-url="/cluster/ajax/go/928" key="go_ajax"></div> </div> </div> </div> <br> <div class="row"> <div class="col-lg-12"> <div class="panel panel-default planet-pagination-container"> <div class="panel-heading">Family Terms</div> <div style="height:300px;overflow-y:auto;" class="planet-ajax-table" base-url="/cluster/ajax/family/928" key="family_ajax"></div> </div> </div> </div> <br> <br><br> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); }, function(xhr, status, error) { // Upon failure... set the tooltip content to error api.set('content.text', status + ': ' + error); }); return 'Loading...'; // Set some initial text } }, show: { effect: function() { $(this).fadeTo(500, 1); } }, hide: { effect: function() { $(this).fadeTo(500, 0); } }, position: { viewport: $(window) }, style: 'qtip-bootstrap' }); }); } $(function () { init_qtip(); $("#leafy_loader").html(get_loader_svg('loader_leafy')); init_planet_loader('loader_leafy'); $('[data-toggle="popover"]').popover({container: 'body'}); $('a[data-target=#helpModal], abbr[data-target=#helpModal]').click(function(ev) { ev.preventDefault(); var target = $(this).attr("href"); // load the url and show modal on success $("#helpModal .modal-content").load(target, function() { $("#helpModal").modal("show"); }); }); }); </script> <script src="/static/js/planet_pagination.js"></script> <script src="/static/js/planet_ajax_table.js"></script> <script type="text/javascript"> var csrf_token = "IjU0NDhjYTI3ZWMyNzEyYzEwODc2ODM1YTJmMzA4Njc1YzZkMTU0N2Mi.GQrGJg.f8wbA7LSW6wjFVyx9miELpkagiw"; $.ajaxSetup({ beforeSend: function(xhr, settings) { if (!/^(GET|HEAD|OPTIONS|TRACE)$/i.test(settings.type) && !this.crossDomain) { xhr.setRequestHeader("X-CSRFToken", csrf_token); } } }); </script> <script src="/static/js/Chart.min.js"></script> <script src="/static/js/hammer.min.js"></script> <script src="/static/js/chartjs-plugin-zoom.min.js"></script> <script> $( document ).ready(function() { $("#chart-loader").html(get_loader_svg('chart-loader_leafy')); init_planet_loader('chart-loader_leafy'); $.getJSON( "/cluster/json/avg_profile/928", function( data ) { var ctx = document.getElementById("chart-area").getContext("2d"); data['options']['responsive'] = true; data['options']['maintainAspectRatio'] = false; data['options']['tooltips'] = { enabled: true, mode: 'label', itemSort: function(a, b, data) { conversion = {'Minimum': 0, 'Mean - Stdev':0, 'Mean': 1, 'Maximum': 2, 'Mean + Stdev': 2} if (conversion[data.datasets[a.datasetIndex].label] > conversion[data.datasets[b.datasetIndex].label]) { return -1 } else if (conversion[data.datasets[a.datasetIndex].label] < conversion[data.datasets[b.datasetIndex].label]) { return 1 } else { return 0 } }, callbacks: { afterTitle: function(tooltipItems, data) { if (data.counts[tooltipItems[0].index] == null) { return null; } else { if (data.counts[tooltipItems[0].index] == 1) { return '(1 sample)'; } else { return '(' + data.counts[tooltipItems[0].index] + ' samples)'; } } }, label: function(tooltipItems, data) { return data.datasets[tooltipItems.datasetIndex].label + ': ' + tooltipItems.yLabel.toFixed(2); } } } var myChart = new Chart(ctx, data); $("#chart-area").toggle(); $("#chart-loader").toggle(); }); }); </script> <script src="/static/js/table2CSV.js"> </script> <script> $( document ).ready(function() { $('[data-toggle="tooltip"]').tooltip(); $("#EnrichedGO").stupidtable(); $("#EnrichedClades").stupidtable(); $("#SimilarClusters").stupidtable(); var csv_data = $("#EnrichedGO").table2CSV({delivery:'value'}); $("#DownloadEnrichedGO").attr('href', 'data:text/plain;charset=utf-8,' + encodeURIComponent(csv_data)); $("#DownloadEnrichedGO").attr('download', "table.csv"); var csv_data = $("#EnrichedClades").table2CSV({delivery:'value'}); $("#DownloadEnrichedClades").attr('href', 'data:text/plain;charset=utf-8,' + encodeURIComponent(csv_data)); $("#DownloadEnrichedClades").attr('download', "table.csv"); var csv_data = $("#SimilarClusters").table2CSV({delivery:'value'}); $("#DownloadSimilarClusters").attr('href', 'data:text/plain;charset=utf-8,' + encodeURIComponent(csv_data)); $("#DownloadSimilarClusters").attr('download', "table.csv"); }); </script> </body> </html>