Heatmap: Cluster_38 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
Light - ZT1
Light - ZT3
Light - ZT5
Light - ZT7
Light - ZT9
Light - ZT11
Light - ZT13
Light - ZT15
Dark - ZT17
Dark - ZT19
Dark - ZT21
Dark - ZT23
Light - ZT25
Nutrient stress - Low nitrogen - 10%
Nutrient stress - Low phosphate - 0%
Nutrient stress - Low sulfate - 2%
Nutrient stress - Low micronutrients - 0%
Nutrient stress - NaCl - 75 mM
Nutrient stress - Mannitol - 100 mM
Nutrient stress - Control
Environmental stress - Prolonged darkness - 72h
Environmental stress - Cold - 4C
Environmental stress - Heat - 37C
Environmental stress - Control
Environmental stress - High light - 150 uE
Environmental stress - Control high light - 40 uE
- - - - - - - - - 3.36 - 1.96 - - - - - - - 1.49 - - 2.49 1.76 - -
0.37 -0.64 -0.55 -0.32 0.05 -0.17 0.12 -0.26 0.03 -0.31 0.84 1.49 0.36 -0.14 0.88 1.63 0.62 -1.53 -0.33 0.69 -2.24 -2.29 -4.06 -3.88 -2.07 -3.35
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
0.93 0.21 0.15 0.12 -1.56 -0.91 0.52 1.69 1.47 1.99 1.22 0.9 -0.32 -1.17 -1.65 0.14 -2.8 -2.0 -2.1 -0.04 - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - -
0.59 -0.6 0.42 -0.82 -1.0 -0.29 0.67 1.46 1.74 1.16 1.12 0.93 0.47 -1.44 -2.32 -1.11 -3.43 -0.55 -1.05 -2.66 -1.3 -2.69 -0.2 -0.7 -3.56 -0.61
-0.72 0.03 0.58 0.24 0.06 -1.35 0.68 0.44 0.68 0.29 0.19 -0.04 0.07 -0.14 -1.12 -0.4 0.82 -0.91 -0.73 0.8 - - -0.86 -3.05 1.7 -0.65
0.5 0.59 0.53 1.01 0.58 0.51 0.54 0.18 0.44 0.46 0.78 1.19 1.35 -0.27 -0.07 -0.39 -1.22 -1.86 -1.01 -0.47 -7.34 - - -2.65 - -2.32
0.29 -0.71 -0.9 0.54 -0.71 0.28 0.43 2.42 2.03 1.64 0.76 1.37 0.67 - - - - - - - - - -2.28 - -1.52 -
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
0.39 0.01 0.04 1.5 0.0 -0.18 -0.86 -0.51 -0.19 -1.25 1.25 0.73 0.86 -2.78 1.57 1.31 0.2 -1.34 0.38 -0.33 - -2.58 - - - -2.77
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - 2.46 - 1.81 - 0.68 - 3.29 - - - - 0.54 - - - - 2.06 - - - - - -
1.07 0.58 0.99 0.11 0.95 0.6 -0.02 1.45 0.2 1.25 -0.51 -0.38 -0.3 - -0.56 -1.58 -1.5 -0.8 -0.11 - - - 1.23 -0.18 - -1.97
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
0.12 -0.6 - - -0.54 0.28 -0.53 0.22 0.33 1.76 1.83 0.95 0.66 -1.32 - -0.75 -0.53 - -0.74 - - 0.94 - - 2.06 -1.31
- 1.2 0.23 -0.04 - - 1.82 1.12 1.09 1.49 - - -0.1 1.35 -0.25 - 0.24 - - - - - - 1.61 - 1.23
2.71 - - - - - - - - 2.63 - 2.83 2.62 - - - - - - - - - - - - -
- -1.6 1.44 - 0.69 - -3.04 -3.47 -3.5 3.82 - -3.4 - 1.09 - - -3.29 -4.03 - -0.65 - -3.89 - - - 1.93
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
0.65 -0.55 0.03 0.01 -0.09 1.22 0.71 0.57 1.23 1.05 1.68 1.16 1.08 -3.1 -1.57 -2.32 -2.06 -2.17 -1.13 -0.96 -2.0 -1.26 -3.09 -4.68 -2.04 -2.07
-0.55 -0.77 -0.07 0.58 0.59 0.83 0.77 0.49 1.08 0.87 0.78 1.04 -0.67 -0.42 -1.57 -0.95 -1.91 -1.2 -0.81 -2.17 -1.13 -0.44 -0.21 -0.47 0.44 -1.65
- - - - - - - - - - - - - - - - - - - - - - - - - -
0.55 -0.03 -0.03 0.22 0.66 -0.23 0.4 1.23 -0.37 0.15 1.02 1.33 0.88 -1.19 -0.13 0.5 0.39 -1.6 -3.65 0.35 - -2.82 - -3.94 -0.57 -1.3
0.38 0.03 -0.15 0.38 0.11 -0.5 0.59 0.6 0.7 0.64 1.1 1.37 0.97 -0.59 0.31 0.84 -0.24 -1.35 -2.12 0.25 -3.55 -3.36 -5.67 -6.98 -3.07 -2.97
-0.86 -3.57 -2.59 -0.62 -2.08 - -1.98 -0.52 -2.04 2.99 -0.56 -2.62 -2.52 - -2.88 -2.57 -3.51 -0.11 -2.75 -2.93 -1.16 1.68 1.18 0.22 2.3 -0.91
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
-0.04 0.03 -0.12 -0.21 0.65 -0.69 0.87 -0.01 1.13 0.44 1.51 1.09 0.34 -0.12 0.34 -0.27 -1.6 -0.43 -0.32 -0.61 -1.5 -3.37 -2.05 -0.2 -2.37 -3.02
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
0.7 -0.0 0.36 -0.83 -0.87 0.56 1.21 1.74 1.74 1.57 1.17 0.83 0.68 -2.19 -2.72 -2.55 -5.81 -1.43 -0.76 -3.39 - -4.33 - - -6.66 -2.08
0.69 0.21 -0.32 -0.4 -0.34 -1.14 1.23 1.51 1.71 1.83 1.12 1.56 0.96 -3.15 -5.67 -5.68 -2.8 -1.27 -1.23 -2.76 - - - -5.67 -5.22 -
0.54 0.47 -0.42 -1.14 -1.53 -0.05 0.88 1.92 1.87 1.3 1.56 1.2 0.35 -2.8 -2.03 -4.61 -2.72 -1.13 -3.51 -1.74 - -3.76 -4.88 -2.99 -0.57 -4.01
0.05 1.51 - - - 0.07 1.58 - - 2.53 - 2.74 2.27 - - - - - - - - -0.34 - - - -
-0.48 -0.1 -0.18 -0.79 -0.62 -0.18 1.0 1.71 1.54 1.85 1.79 1.49 1.25 -5.2 -3.78 -4.63 - -1.68 -1.74 -4.93 -5.05 -3.93 - - -5.22 -
1.67 - - - - 0.55 0.55 - - 3.53 1.47 0.63 0.43 - - - 0.77 - - - - - - - -0.08 -
0.98 0.59 -0.84 -0.35 - -2.71 0.53 1.25 2.24 1.34 1.61 1.23 0.99 - -3.05 -1.97 - -0.2 -1.96 -1.69 - - - -2.06 - -1.04
0.64 -0.96 -1.61 -0.57 -0.57 0.59 1.25 1.44 1.81 1.76 1.19 1.14 0.56 -0.88 - -1.81 -1.7 -1.65 -0.84 -2.67 - - - -3.45 -0.93 -
- - - - - - - - - 4.08 - - - - - - - - - - 3.18 - - - - -
- -0.02 0.84 -0.08 -0.45 - 1.09 - - 1.76 -0.19 - -0.26 0.48 - -0.17 - 1.81 0.49 -0.24 - - 1.47 0.74 -0.83 0.34
- - - - - - - - - - - - - - - - - - - - - - - - - -
0.53 0.02 -0.55 -0.17 -0.52 -0.86 0.72 1.47 1.64 1.39 1.82 1.86 1.1 -3.14 -4.39 -2.01 -2.45 -1.76 -2.22 -3.9 - - - - -3.76 -5.65
-1.52 -2.52 -1.54 -1.64 - -0.9 1.77 2.16 2.37 2.33 1.63 1.35 -0.97 - - - - - - - - - - - - -
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
- 1.87 - - - - - - - 3.79 - 2.39 - - - - - 1.7 - - - - - - - -
0.85 -0.09 1.3 -0.6 -2.14 -1.1 -0.28 1.05 1.39 2.33 1.77 1.26 1.57 - - - - - -2.98 - - - - - - -
1.29 0.51 -0.51 -0.79 -0.55 -0.73 1.42 2.03 2.34 1.48 -0.81 0.36 1.45 -1.33 - - - - - - - - - - - -
0.32 -0.21 -0.73 -1.16 -1.22 -0.65 1.33 1.9 1.59 2.0 1.78 1.48 1.17 - - - - -5.95 - - - - - - - -
0.93 1.41 0.4 -1.1 -1.4 -2.04 0.02 1.08 1.62 1.97 1.98 1.46 1.1 - - - - - -3.69 - - - - - - -
0.93 1.08 0.43 0.98 -1.55 -2.36 -0.33 1.54 1.93 1.69 1.09 1.59 0.91 - -2.86 - - -3.15 - -2.93 - - - - - -
- - - - - - - - - - - - - - - - - - - - - - - - - -
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
0.46 1.18 -0.01 -0.18 0.11 -0.54 0.66 -0.62 -0.67 1.98 -1.12 2.4 1.57 -6.95 - -4.5 0.62 -3.03 -2.08 -2.48 - -4.46 - -8.05 -1.71 -0.5
0.92 0.31 -0.14 0.94 0.52 1.44 1.48 0.29 1.56 0.5 0.67 0.5 0.16 -2.24 - -2.15 -1.05 -0.77 -2.44 -0.68 - - -2.29 -1.37 -1.46 -2.83
0.63 0.09 0.49 -0.05 -0.15 -0.31 0.12 -0.51 0.4 0.61 1.04 1.95 0.97 -0.62 0.74 0.62 -0.12 -2.22 -2.66 0.14 - -3.02 - - - -1.28
0.05 -0.73 -0.03 -0.05 -0.18 -2.22 -0.86 -0.32 0.02 1.32 1.05 1.39 1.58 -2.23 -0.73 0.18 0.86 -0.14 -0.4 0.13 - -1.48 - -0.33 -1.09 -0.69
- - - - - - - 3.19 - 3.22 - - - - - - - - - 1.92 - - 1.92 - - -
- - - - - - 2.86 2.74 - 2.63 - - - - - - - - - - - - - - - 2.55
- - - - - 2.29 - - - 1.96 - 2.15 - - - - - 1.3 - - 1.06 - - - 1.37 2.5
- - - - - - 2.19 1.29 2.16 2.56 2.05 2.18 - - - - - - - - - - - - - -
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
0.29 0.29 1.15 - - - 1.26 0.37 1.24 2.64 1.7 2.25 0.05 - - - - - - - - - - - - -
0.58 0.33 -0.26 -0.15 0.26 0.27 0.9 1.55 1.61 1.86 1.52 1.04 1.11 - - - -1.24 - -3.32 - - - - - - -
0.67 - -1.18 -1.9 -1.32 -1.84 0.46 2.09 1.62 2.34 1.7 1.71 1.45 - - - - - - - - - - - - -
0.55 -0.19 0.21 -0.36 -1.57 0.54 1.69 1.87 1.67 1.63 1.41 1.05 0.63 - -4.15 -4.16 - -2.38 -4.12 -2.81 - - - - - -
-0.83 - - -0.89 0.26 - -0.76 - 1.87 2.7 0.01 - - 0.15 - 0.34 -0.73 -0.63 -1.32 -1.05 - -0.04 1.08 -1.07 1.95 -
0.84 -0.51 -1.21 -2.19 -0.35 -0.03 1.28 0.85 1.62 1.81 1.56 1.15 1.12 -1.19 -3.37 -0.48 -0.46 -2.86 -0.54 -2.62 - - - - - -
0.44 -0.16 -0.04 0.96 0.21 0.12 0.48 0.51 0.19 0.3 1.22 1.88 1.27 -0.88 -0.97 0.19 -0.41 -3.45 -3.22 -0.53 -2.72 -3.26 -2.52 - -2.48 -0.94
-0.09 0.47 - -0.03 0.17 0.62 0.04 0.34 0.84 0.49 -0.06 1.41 1.38 -1.6 -2.1 0.99 0.52 - -2.09 -0.16 -2.95 - - - 1.44 -1.44
2.04 0.64 2.09 - - - 1.84 - - 2.01 0.52 1.61 1.99 - - - - - - - - - - - - -
1.33 0.46 0.85 0.83 1.09 0.41 -0.14 0.14 0.52 2.1 1.43 1.8 0.23 - - - - - - - - - - - - -
- - - - 0.44 - - 1.21 0.38 3.34 0.21 - - - - - - - - -0.13 - - -0.13 1.85 -0.43 1.83
0.22 0.4 -0.43 0.86 -0.5 -0.3 -0.29 0.77 0.57 0.4 1.93 1.97 1.47 -2.63 -1.86 0.06 - -0.71 - -0.31 -1.62 -3.68 - - -2.0 -3.9
0.49 -0.15 -0.82 0.66 0.21 -0.85 0.19 0.57 0.34 0.5 0.91 1.36 0.86 -0.13 0.49 1.15 0.45 -1.18 -2.24 0.44 -4.61 -3.72 - - -4.87 -2.18
- - - - -4.12 - - - - 3.72 - - 3.59 - -2.49 -3.85 - - - - -3.18 -4.08 - -1.64 - -
-0.11 0.03 -1.73 0.41 -1.68 -1.6 -0.04 0.65 0.15 2.18 2.23 1.27 1.19 -1.35 -2.83 0.34 - -2.09 -0.62 -1.47 - -2.06 - - -2.08 -0.54
- - - 1.99 - - - 1.13 - 2.83 0.92 2.01 1.31 - - - - - - - 0.93 - - - 0.24 0.33
0.39 -0.37 0.17 0.87 0.87 0.76 -0.74 0.79 0.39 0.74 1.31 1.97 1.44 -2.56 -2.05 -3.41 -1.33 -0.65 -1.61 -1.12 -3.24 - -1.41 -3.65 -2.64 -
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
- - - - - - - - - 4.11 - - - - - - - - 3.12 - - - - - - -
1.96 - - - - - - - - 4.47 - - - - - - - - - - - - - - - -
0.88 0.65 -0.57 0.35 0.12 -0.76 -0.27 0.99 1.06 1.74 1.2 1.67 1.74 - -3.97 -1.74 -1.32 -1.85 -1.6 -3.1 -4.71 - - - -3.33 -1.85
1.14 0.53 - -0.43 -1.55 -1.2 1.7 0.77 1.06 1.7 2.26 0.46 0.91 -0.81 - - -1.48 -1.11 0.2 - - - - - - -
- - 2.51 - - - - - - 2.4 - 2.62 2.41 - - - - - - - - - - - 1.84 -
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
2.42 1.79 0.29 - -1.48 -1.37 -1.17 - -1.25 2.34 - 0.3 - -1.03 - -1.4 -1.15 1.35 -1.39 - - - - - 1.01 0.85
- -0.32 -0.48 -0.46 -1.29 -1.58 - 0.8 1.33 1.6 0.8 0.61 0.73 -0.84 -0.73 0.5 - -2.07 0.24 - -0.87 -0.24 -0.46 -1.58 0.67 1.47
-0.44 -0.25 -1.25 -2.0 -1.17 -1.01 0.43 0.91 1.47 2.31 1.82 1.25 0.62 - -2.72 - - -1.97 -2.82 -2.85 - -4.31 -4.19 - 1.85 -
1.68 -1.09 - -1.15 1.88 - 0.3 -0.17 0.58 0.69 2.0 1.97 1.13 -1.81 -0.32 - -1.03 - - 0.4 - - - - - -
-0.05 0.62 0.4 0.48 1.1 1.05 1.09 0.1 1.44 0.71 0.66 1.19 -0.32 0.2 -3.09 -0.71 -0.79 -3.15 -2.21 -3.38 -3.94 - -0.67 -1.52 - -1.12
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
- - - - - - - - - 4.7 - - - - - - - - - - - - - - - -
1.54 - 0.2 - - 0.88 -0.6 0.22 1.23 2.1 1.94 1.88 1.87 - - - - - - - - -1.06 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.